Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30911.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 47 1e-05
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 46 3e-05
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 45 5e-05
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 43 2e-04
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 42 5e-04
SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 39 0.004
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 39 0.004
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23) 38 0.008
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 37 0.011
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.019
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 35 0.043
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.043
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.057
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.057
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 34 0.076
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 31 0.53
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.53
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.53
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0) 31 0.53
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.53
SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 31 0.93
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2) 30 1.2
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.6
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21) 28 6.6
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 54.0 bits (124), Expect = 9e-08
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +3
Query: 258 LTXAHCSQNVDPSTVVLRGGSSWRK-----NXTIIPIEKVIAHPXXDNPAFDKXVAVMKT 422
LT AHC Q+ S + L G WR +IP+E++I+H D A++K
Sbjct: 585 LTAAHCVQDERASNIKLTMGE-WRLFNVDGTEQVIPVERIISHANYSYNTVDYDYALLKL 643
Query: 423 KEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRT 530
P+ F+ ++P+ LP D C V+GWG T
Sbjct: 644 TRPLNFTQYVQPVCLPDSD--FPAGTLCYVTGWGST 677
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +1
Query: 151 IVGGQEAFIDDYPHQVSFVVNNT---YFCGGSIIS 246
I+GG A ++P QVS +N++ + CGG++IS
Sbjct: 546 IMGGANAEHGEWPWQVSMKLNSSSLPHICGGNVIS 580
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 351 IEKVIAHPXX-DNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGR 527
+E++I HP + D VA++K P+ ++D ++P+ LPS+ C +SGWG
Sbjct: 182 VERIILHPKYAPHNNHDYDVALIKLASPLQYNDRVRPVCLPSLKEDLEENTQCYISGWGH 241
Query: 528 TKQ 536
++
Sbjct: 242 LQE 244
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +3
Query: 249 ELXLTXAHCS-QNVDPSTVVLRGGSSWRKNXT---IIPIEKVIAHPXX-DNPAFDKXVAV 413
E +T AHC QN++PS ++ G+ R++ IP+ + H + ++ +A+
Sbjct: 322 EWVVTAAHCVFQNIEPSNYKIKLGAHDRESSEGALTIPVTAIHMHTRFMTDGSYGYDIAI 381
Query: 414 MKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTK 533
MK P T+ P LP + C V+GWG T+
Sbjct: 382 MKLANPAPIGHTISPACLPGLYDQVTSGTMCYVTGWGMTE 421
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 342 IIPIEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGW 521
+IP+E++I+H D A++K P+ F+ ++P+ LP D C V+GW
Sbjct: 368 VIPVERIISHANYSYNTVDYDYALLKLTRPLNFTQYVQPVCLPDSD--FPAGTLCYVTGW 425
Query: 522 GRT 530
G T
Sbjct: 426 GST 428
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
RIVGG EA +P QV+ ++N T FCGGS+++EN
Sbjct: 53 RIVGGVEAAPGAWPWQVALLMNGTQFCGGSLVNEN 87
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = +3
Query: 246 RELXLTXAHC-SQNVDPSTVVLRGGSSWRKNXTIIP----IEKVIAHPXXDNPAFDKXVA 410
++ +T AHC +N PS + G+ R T + ++++ H +A
Sbjct: 64 KDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMRHLKNDIA 123
Query: 411 VMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRT 530
+++ EP+ SD + + LPS C ++GWGRT
Sbjct: 124 LLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRT 163
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
R+V G A +P Q+S VN + CGGS+I+++
Sbjct: 31 RVVNGDNAQQHSWPWQISLRVNGRHICGGSLIAKD 65
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 345 IPIEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWG 524
IPIE ++ HP ++ +D +A++K ++PI F+ + + LP C VSGWG
Sbjct: 1863 IPIEGIVVHPSYNDLDYD--IALLKLRQPITFNAYVSQVCLPQA--ALLAGTPCYVSGWG 1918
Query: 525 R 527
R
Sbjct: 1919 R 1919
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +3
Query: 369 HPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPS--MDRGNXRXDXC-XVSGWGRTK 533
HP ++D +A+++ +P+ F+D +KPI LPS D + + +SGWG+ K
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTFTDYVKPICLPSAASDYAQLQANVSGTISGWGKRK 256
>SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 345 IPIEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWG 524
+ I K+ HP D +A+++ P+ + ++ I LPS C +SGWG
Sbjct: 32 LTISKITYHPGFSFATADHDIAILRLSAPVLLTSSVNTICLPSQGARASLGGNCFISGWG 91
Query: 525 R 527
R
Sbjct: 92 R 92
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +3
Query: 306 LRGGSSWRKNXTIIPIEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRG 485
LR G ++ T+ +VI HP D VA+++ P + + I LP
Sbjct: 1393 LRRGDGTEQDFTV---RQVIVHPNYRRQTTDSDVALLRLSHPATLNKAVSLICLPKEGES 1449
Query: 486 NXRXDXCXVSGWGRT 530
C ++GWGRT
Sbjct: 1450 EAVGKNCYITGWGRT 1464
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +3
Query: 258 LTXAHC-SQNVDPSTVVLRGGSSWRKNXTI----IPIEKVIAHPXXDNPAFDKXVAVMKT 422
+T AHC +++ +P+ + G R + + ++KVIAHP +NP +A+++
Sbjct: 513 VTAAHCVARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQYNNPRLSNDIALIEL 572
Query: 423 KEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSG 518
P S + P+ LP C ++G
Sbjct: 573 ASPAKLSSRVNPVCLPPHGYKLPAGSRCFITG 604
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 136 VNDDRIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISENXY*LXP-IALRTSTPRQWS*E 312
+ R++GG++A +P Q++ + CGGS++S R+S P Q+
Sbjct: 472 ITQSRVIGGKDAIPGAWPWQIALKSRGNFICGGSLVSSTWVVTAAHCVARSSNPAQYQII 531
Query: 313 VEVH 324
V H
Sbjct: 532 VGEH 535
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNT-YFCGGSIISE 249
RIVGG+EA + +P QV VVN T + CGGS+I +
Sbjct: 249 RIVGGREASPNSWPWQVDLVVNGTRHNCGGSLIDK 283
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 396 DKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTKQ 536
D VA++K K P F + + LPS+ C V+GWG+T +
Sbjct: 82 DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFVTGWGKTAE 128
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 342 IIPIEKVIAHPXXDNPAFDKX----VAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCX 509
II EK+ HP D +A++K K P F + + LP C
Sbjct: 324 IIKGEKLFIHPKYKLGGLDYTGDYDIALVKLKRPAVFYKRVHSVCLPEKSWSPPDGAGCY 383
Query: 510 VSGWGRTKQ 536
V+GWGRT +
Sbjct: 384 VTGWGRTAE 392
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 405 VAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRT 530
+A++ +PI FSD ++PI LP D C ++GWG T
Sbjct: 81 IALLHLAKPIQFSDRIQPICLPQDDTEFPAGKMCYLTGWGET 122
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 396 DKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTKQ 536
D VA++K K P F + + LPS+ C V+GWG+T +
Sbjct: 459 DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFVTGWGKTAE 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 396 DKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTKQ 536
D VA++K K P F + + LPS+ C V+GWG+T +
Sbjct: 342 DYDVALIKLKRPAVFHKCVYSVCLPSVTANLTTGTKCYVTGWGKTAE 388
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 342 IIPIEKVIAHPXXDNPAFDKX----VAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCX 509
II EK+ HP D +A++K K P F + + LP C
Sbjct: 609 IIKGEKLFIHPKYKLGGLDYTGDYDIALVKLKRPAVFYKRVHSVCLPEKSWSPPDGAGCY 668
Query: 510 VSGWGRTKQ 536
V+GWGRT +
Sbjct: 669 VTGWGRTAE 677
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +1
Query: 142 DDRIVGGQEAFIDDYPHQVSFVVN----NTYFCGGSII 243
+ RIVGG+EA + +P QV ++ T++CGGS+I
Sbjct: 243 ESRIVGGREAPRNSWPWQVEIILKTPNLTTHYCGGSLI 280
>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
Length = 299
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RIVGG EA +P QVS + ++ CGGS++S
Sbjct: 30 RIVGGDEAVPHSWPWQVSIRLKGSHICGGSLLS 62
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +3
Query: 258 LTXAHCSQNVDPSTVVLRGGSSWRK----NXTIIPIEKVIAHPXXDNPAFD-KXVAVMKT 422
LT AHC + D S + G RK + +I + VI H NP + VA++K
Sbjct: 69 LTAAHCILSDDASKYKVVLGDVDRKKIEGSEQMIDVAMVIKHYAYGNPVPNANDVALLKL 128
Query: 423 KEPIXFSDTMKPIXLPS-MDRGNXRXDXCXVSGWGRT 530
++ +D + + LP MD D C ++GWGR+
Sbjct: 129 RDYPTKTDFVNTVCLPQYMDHVEIGKD-CFITGWGRS 164
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
RI+GGQ + I+ +P V+ ++++ CGGS++ E+
Sbjct: 40 RIMGGQRSTIEQHPWMVAMMLDSAQACGGSLVPED 74
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Frame = +3
Query: 258 LTXAHCSQNVDPSTVVLRGGSSWRKNXTIIPIEKVIAHPXX-------DNPAFDKXVAVM 416
+T AHC + V+ G K + + HP ++ D VA++
Sbjct: 77 VTAAHCFDSNRLRWRVVAGNDMPSKAVNTTGVSAIWRHPQYKSNIASLESGPCDYDVALV 136
Query: 417 KTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGR 527
K ++ + + PI L D C V+GWGR
Sbjct: 137 KLEKSVATTPKTVPICLVPRDTPRDLKRDCYVAGWGR 173
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R++GG++A +P Q+S V + CGG++IS
Sbjct: 435 RVIGGEDAAPHSWPWQISLRVRGKHMCGGTLIS 467
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Frame = +3
Query: 258 LTXAHCSQNVDPSTVVLRGGSSWRKNXT----IIPIEKVIAHPXXDNPA-FDKXVAVMKT 422
+T +HC + + +R G+ W+ T I+++ HP +P + +A++
Sbjct: 286 VTASHCVHKLTTGDLYVRMGAHWKDGKTGSEQDFRIQRIFMHPNYHSPVQYANDIALLLL 345
Query: 423 KEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTKQ*AAS 548
P L C +SGWGR AS
Sbjct: 346 DRPARLDRYTNLACLAPRSSPLPDGTRCWISGWGRLSSGGAS 387
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 142 DDRIVGGQEAFIDDYPHQVSF-VVNNTYFCGGSII 243
+ RIVGG A +P Q N +FCGG+++
Sbjct: 246 NSRIVGGTTAQRGAWPWQAMLRYYNGNHFCGGTLV 280
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +3
Query: 258 LTXAHCSQ-NVDPSTVVLRGGSSWRKNXT---IIPIEKVIAHPXXDNPAFDKXVAVMKTK 425
LT AHC Q + +P+ L G+ R N ++ + +VI+H V +++
Sbjct: 122 LTAAHCVQRSSNPADYTLAAGAHRRVNDAHAQVLRVSQVISHKEFSMGHLRNDVTLLRLS 181
Query: 426 EPIXFSDTMKPIXLPSMDRGNXRXDXCXVS 515
P+ SD + I LP+ C +S
Sbjct: 182 APVQLSDKIGTICLPAHGDRAPAGGHCYIS 211
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RI+ G+EA + +P Q+S V ++ CG S++S
Sbjct: 85 RIINGEEAVPNSWPWQLSLRVYGSHNCGASLLS 117
>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 285
Score = 35.1 bits (77), Expect = 0.043
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISE 249
R+VGG EA +P Q++ + +CGG+++ E
Sbjct: 28 RVVGGDEAKAGQFPWQIALLFKRQQYCGGALVHE 61
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 387 PAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTK 533
P FD +A+++ P+ F+ ++PI + + C +SGWG T+
Sbjct: 125 PMFD--IALIELDRPVVFNFHVQPICIMRPNISFKWNTACFISGWGHTR 171
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFV--VNNTYFCGGSIIS 246
RIVGGQ A ++D+P Q +++T CGGS+I+
Sbjct: 432 RIVGGQTAKVEDWPWQAGLKKGLDDTIVCGGSLIN 466
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 345 IPIEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWG 524
IP+ VI HP D+ +A+++ P+ F K ++ C ++GWG
Sbjct: 152 IPVSHVIEHPEYDDRKIKNDIALLELSRPVKFDREGKVGTACLTNQQPTPGKRCYITGWG 211
Query: 525 RT 530
T
Sbjct: 212 ST 213
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 34.3 bits (75), Expect = 0.076
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R+V G A +P Q+S VN + CGGS+I+
Sbjct: 80 RVVNGDNAAQHSWPWQISLRVNGRHICGGSLIT 112
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 351 IEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVS---GW 521
I ++ HP D+ FD +A++K S+ ++PI LP D GW
Sbjct: 185 ISEIRTHPQFDHVLFDADLALIKLDGEAIISEYVRPICLPETDDQASLISPSKFGMAVGW 244
Query: 522 GRT 530
G+T
Sbjct: 245 GKT 247
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISE 249
RIVGG + YP V CGGS+ISE
Sbjct: 107 RIVGGHDTVKGAYPWHVLIRKGGHVACGGSLISE 140
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFV--VNNTYFCGGSII 243
RIVGG EA I+ +P Q + N FCGGS+I
Sbjct: 29 RIVGGTEAPINGWPWQAMLLRSPNGDQFCGGSLI 62
>SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 249
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 405 VAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRT 530
+A++K P ++ ++ + LP+ C ++GWG+T
Sbjct: 139 IALLKLSRPAVINEFVRTVCLPAQGSRALEGTMCFITGWGKT 180
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RI+ G +A + +P V NN + CGG+++S
Sbjct: 351 RIISGSDAQPNSWPWMVQINYNNGHHCGGTLVS 383
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
RIV G++A +P Q+SF ++ CG S+++
Sbjct: 240 RIVNGEDAVPHSWPWQLSFRYKGSHICGASLLT 272
>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
Length = 687
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R++GG+ A +P QVS + + CGG++IS
Sbjct: 476 RVIGGEAARPYSWPWQVSVSMGKLHSCGGALIS 508
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIISEN 252
RIVGG+EA +P + V ++ CGG++I+ +
Sbjct: 723 RIVGGREAKAGAWPWLAAIYVKGSFRCGGALIARD 757
>SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 405 VAVMKTKEPIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRTKQ*AASTSRK 560
+A+++ K+ + S ++PI LP + + C ++GWG+ A S+K
Sbjct: 208 IALIQLKKRVRRSRLVRPICLPRVGQEVEIGTKCYMTGWGKRNHGDADMSKK 259
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
R+V G A +P Q+S N + CGGS+I+
Sbjct: 37 RVVNGANAPQHAWPWQISLRTNGQHICGGSLIT 69
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVS-----FVVN-NTYFCGGSIISEN 252
RI GG ++ YP QV+ F N NT+ CGG++I+E+
Sbjct: 1160 RIYGGSDSIPGGYPWQVALEFDTFQSNYNTFHCGGTLIAED 1200
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 342 IIPIEKVIAHPXXDNPAFDKXVAVMKTKEPIXFSDTMKPIXLPS 473
IIP + +HP +D +A+++ + ++ ++P+ LP+
Sbjct: 1241 IIPSAGIYSHPRFSWRTYDSDIALIRLRWKANITEYVRPVCLPN 1284
>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
Length = 157
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 142 DDRIVGGQEAFIDDYPHQVSFVVNNTYFCGGSII 243
D RIVGG + +P QV+ ++N+ C GS+I
Sbjct: 51 DKRIVGGVVSSEGLWPWQVALLLNDRQVCAGSLI 84
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFVVNN-TYFCGGSIIS 246
RIVGG A +P QV + N+ FCGG++++
Sbjct: 630 RIVGGSTAPPGAWPWQVMLIYNSGRQFCGGTLVT 663
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 148 RIVGGQEAFIDDYPHQVSFV----VNNTYFCGGSIISEN 252
RIVGG +A ++P Q + + FCGG+++ E+
Sbjct: 210 RIVGGNDAMHGEWPWQAMLMFQTPLGYKQFCGGALVHED 248
>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
Length = 418
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 151 IVGGQEAFIDDYPHQVS-FVVNNTYFCGGSIIS 246
I+GG +A + ++P QVS ++ + CGG++++
Sbjct: 258 IIGGTDAAVGEWPWQVSLYLTHYGPVCGGTLLT 290
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 161 PPTILSSFTMGSLRNSSKVGKLEKSRPYASCEY 63
PP + S T+ L ++S +GKL P S E+
Sbjct: 418 PPPVPESKTLAKLLDASDIGKLHTLEPEQSIEF 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,040,815
Number of Sequences: 59808
Number of extensions: 314290
Number of successful extensions: 660
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -