Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30911.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    42   4e-04
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    37   0.013
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +3

Query: 258 LTXAHC-SQNVDPSTVVLRGGSSWRKNXTIIPIEKVIAHPXXDNPAFDKXV--AVMKTKE 428
           LT AHC +++  P++  +R G     + +   +  V  HP   N  F      A+M+   
Sbjct: 95  LTAAHCFAKDRRPTSYSVRVGGHRSGSGSPHRVTAVSIHPWY-NIGFPSSYDFAIMRIHP 153

Query: 429 PIXFSDTMKPIXLPSMDRGNXRXDXCXVSGWGRT 530
           P+  S T +PI LPS+     R   C V+GWG T
Sbjct: 154 PVNTSTTARPICLPSLPAVENR--LCVVTGWGST 185


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = +3

Query: 258 LTXAHCSQNVDPSTVVLRGGSSWRKNXT-----IIPIEKVIAHPXXDNPAFDKXVAVMKT 422
           +T AHC +  +  +        W  N T     I  ++++  +P   +  F   +A+++ 
Sbjct: 65  ITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILEI 123

Query: 423 KEP-IXFSDTMKPIXLPSMDRGNXRXDXCXVSGWG 524
             P I F++  +PI LPS D        C VSGWG
Sbjct: 124 PYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWG 158


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 163 QEAFIDDYPHQVSFVVNNTYFCGGSIIS 246
           QE+ I ++P  VSF V+     GGSIIS
Sbjct: 21  QESKIKNFPWAVSFTVDGVNRLGGSIIS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,748
Number of Sequences: 27780
Number of extensions: 242308
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)