Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30911.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    40   1e-05
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.009
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
 Frame = +3

Query: 192 PSIVCGEQYVFLRRLDHQRELXLTXAHC--SQNVDPSTVVLRGGSSWRK----NXTII-P 350
           P ++CG   +  R +       LT AHC   +N     +V+ G   W      N T++  
Sbjct: 184 PGMICGATIISKRYV-------LTAAHCIIDENTTKLAIVV-GEHDWSSKTETNATVLHS 235

Query: 351 IEKVIAHPXXDNPAFD----KXVAVMKTKEPIXFSDTMKPIXLPSMD-RGNXRXDXCXVS 515
           I KVI HP  D    D      +A++KT++ I F D + P  LP      +       V 
Sbjct: 236 INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL 295

Query: 516 GWGRT 530
           GWG T
Sbjct: 296 GWGHT 300



 Score = 26.2 bits (55), Expect = 0.24
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 139 NDDRIVGGQEAFIDDYPHQVSFVVNNTY----FCGGSIISE 249
           N  RIVGG    I+++P      +  TY     CG +IIS+
Sbjct: 157 NPSRIVGGTNTGINEFPMMAG--IKRTYEPGMICGATIISK 195


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 121  GTLPKLGNWRNLDRTQVVNIVELIQR 44
            GT PK G +RN DR  +V  V  +QR
Sbjct: 1032 GTRPKRGKYRNYDRDSLVEAVRAVQR 1057


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 225 LRRLDHQRELXLTXAHCSQNVDPSTVV 305
           L+RLDHQ        H  QNV P  VV
Sbjct: 510 LKRLDHQPYQYKIAVHSEQNV-PGAVV 535


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 282 NVDPSTVVLRGGSSWRKNXT 341
           N+DPS   L   ++W+K+ T
Sbjct: 384 NLDPSNRKLPAPANWKKDTT 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,618
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)