Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30911.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54860.1 68418.m06834 integral membrane transporter family pr...    29   3.1  
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co...    28   4.1  
At5g64870.1 68418.m08160 expressed protein                             28   5.4  

>At5g54860.1 68418.m06834 integral membrane transporter family
           protein contains 10 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 491

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -1

Query: 484 PLSIEGSXIGFIVSLNXIGSLV--FITATXLSNAGLSXSGCAITFSMGMIVXFFRHELPP 311
           P  IEG+     +S+N +G+ V  F+ A   S  G+S SG      MG+ +  F   +P 
Sbjct: 417 PPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGIS-SGSFDNMFMGLAIQVFCTYIPV 475

Query: 310 L 308
           L
Sbjct: 476 L 476


>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
           contains Pfam profile PF01011: PQQ enzyme repeat
          Length = 978

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 429 VLWSS*QRXPCRTQGCHXLDALSLFQWE 346
           ++WS     P ++Q C   + +SL+QW+
Sbjct: 503 IVWSMLLNSPSQSQSCERPNGVSLYQWQ 530


>At5g64870.1 68418.m08160 expressed protein
          Length = 479

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = +3

Query: 15  NGVF*AFRDFLWINSTIF-----TTCVRSRFLQFP----NFGRVPQGAHGKR*QNRGGTG 167
           N  + A RDFL IN+ I+     T  V  R LQ      N G   QG +G          
Sbjct: 376 NNDYSAMRDFLMINNGIYQDIAKTNAVAIRDLQPKISVWNHGGAEQGMNGGGKATMNDIA 435

Query: 168 GLHR*LPP 191
           GL++ LPP
Sbjct: 436 GLYKMLPP 443


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,118,466
Number of Sequences: 28952
Number of extensions: 235947
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)