Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30907.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             107   4e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   7e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           95   3e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 78   4e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.23 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.2  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.2  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   2.8  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   4.9  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   6.5  
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   27   6.5  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   8.6  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  107 bits (258), Expect = 4e-24
 Identities = 48/81 (59%), Positives = 62/81 (76%)
 Frame = +2

Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 437 TREHALLAFTLGVKQLIVGVN 499
           TREHA+L  +LGV QLIV +N
Sbjct: 61  TREHAILVRSLGVTQLIVAIN 81


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/81 (49%), Positives = 58/81 (71%)
 Frame = +2

Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
           +++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269

Query: 437 TREHALLAFTLGVKQLIVGVN 499
           TREHA+LA T GVK L++ VN
Sbjct: 270 TREHAMLAKTAGVKHLVILVN 290



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 34/36 (94%), Positives = 35/36 (97%)
 Frame = +2

Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 364
           IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25  IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERE 246
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 308 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 487
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 488 V 490
           +
Sbjct: 123 I 123


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +2

Query: 263 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 394
           I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 442
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 40  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 213
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 262 IDWIPXHAQPLVCPIPKH 209
           +DWIP + +  VC +P H
Sbjct: 247 VDWIPNNGKVAVCDVPPH 264


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 64  INIVVIGHVDSGKSTTTGHLIY 129
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,877
Number of Sequences: 59808
Number of extensions: 285577
Number of successful extensions: 678
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)