Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30900.Seq
         (524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   0.94 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.8  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 159 RFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIR 64
           R++K VL +SG +   +    T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 65  RIASVVMECCV*TGAHWT 118
           R+  V M+C      HWT
Sbjct: 179 RLLGVAMDCLKGNAKHWT 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPP 58
           SP  P +  DV+ PPP
Sbjct: 723 SPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPP 58
           SP  P +  DV+ PPP
Sbjct: 615 SPLTPHEAFDVKLPPP 630


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPPQLRIASV 79
           SP+R     + + P PQ R  SV
Sbjct: 684 SPTRDKSKQNEKSPSPQQRSPSV 706


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,526
Number of Sequences: 336
Number of extensions: 1737
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)