Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30900.Seq
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 100 3e-22
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 100 3e-22
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 29 0.32
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 29 0.42
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 25 6.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.1
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 99.5 bits (237), Expect = 3e-22
Identities = 46/84 (54%), Positives = 60/84 (71%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSMV 195
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 196 XIXXTVKGXGHVAQVYAIRQLFQK 267
I V G GHV+Q+YAIRQ K
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 43.2 bits (97), Expect = 2e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
AISKA++A+YQK+VDE SK +K + R + P EP+KF G A R
Sbjct: 81 AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARAR 134
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 99.5 bits (237), Expect = 3e-22
Identities = 46/84 (54%), Positives = 60/84 (71%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSMV 195
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 196 XIXXTVKGXGHVAQVYAIRQLFQK 267
I V G GHV+Q+YAIRQ K
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 43.2 bits (97), Expect = 2e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
AISKA++A+YQK+VDE SK +K + R + P EP+KF G A R
Sbjct: 81 AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARAR 134
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 29.5 bits (63), Expect = 0.32
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGK-EKFSMVXIXXTV 213
G++K++ A G G VNG P D+ R++ K + L + + + TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK--HAVYPLAACNRLTNYNVWATV 69
Query: 214 KGXGHVAQVYAIRQLFQK 267
G G Q A+ K
Sbjct: 70 HGGGPTGQSGAVHAAISK 87
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 29.1 bits (62), Expect = 0.42
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 200 SXLQXRVVVM*H-KFTLSDSYFKSSDRLLPEICR-RSLQEGNQDILVPY 340
S L+ V++ H KF D+Y K + ++P IC+ S Q++L Y
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYY 807
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 6.9
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = +2
Query: 119 WLXPDCCSTNFRNLSFXSARKNSLWLXSXLQXRVVVM*HKFTLSDSYFKSSDRLLPEI 292
W D S N S S K S W L+ + + S K+ +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 103 RLHAAFHDHACNTQLRWRFS 44
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 138 QQSGXNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 7
Q +G Q+ W V T L + N ++YLD +D T
Sbjct: 29 QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,787
Number of Sequences: 5004
Number of extensions: 28234
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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