Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30900.Seq
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           94   5e-20
11_01_0155 - 1287003-1287452                                           94   5e-20
07_03_0227 - 15398371-15398925                                         30   0.99 
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657...    27   7.0  
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533...    27   7.0  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 42/87 (48%), Positives = 58/87 (66%)
 Frame = +1

Query: 7   REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKF 186
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPIL  G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SMVXIXXTVKGXGHVAQVYAIRQLFQK 267
             + +   V+G G  +Q+YAIRQ   K
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAK 93



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
           AI+KAL+A+YQKYVDEASKK +K       R   +  P   EP+KF G+ A  R
Sbjct: 90  AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARAR 143


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 42/87 (48%), Positives = 58/87 (66%)
 Frame = +1

Query: 7   REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKF 186
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPIL  G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SMVXIXXTVKGXGHVAQVYAIRQLFQK 267
             + +   V+G G  +Q+YAIRQ   K
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAK 93



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
           AI+KAL+A+YQKYVDEASKK +K       R   +  P   EP+KF G+ A  R
Sbjct: 90  AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARAR 143


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 157 VPEVCTAAVWXQPSPMGARLHAAFH--DHACNTQLRWRF 47
           +P +C A  W  P+   A  H  FH     C+ + RW +
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61


>10_07_0132 +
           13263577-13263732,13265391-13265456,13265607-13265705,
           13267020-13267084,13267210-13267294,13267389-13267422,
           13267539-13267642,13268085-13268408,13269090-13269605
          Length = 482

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  KPPPQLRIASVVMECCV*TGAHWTW-LXPDCCSTNFRNLSFXSARKNSLWLXSXLQXRVV 223
           K PPQ+ ++ + + C V  G  + W L     +   + L    A  + +WL   +   +V
Sbjct: 16  KAPPQISLSGLFLACMVAGGVQYGWALQLSLLTPYVQTLGIPHALTSVMWLCGPIAGLIV 75


>01_05_0500 +
           22752190-22752329,22752957-22753032,22753292-22753351,
           22754718-22754882,22756299-22756358
          Length = 166

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 111 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 25
           W  V T H +T +A R+C G F   ++LD
Sbjct: 18  WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,095
Number of Sequences: 37544
Number of extensions: 209009
Number of successful extensions: 440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)