Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30900.Seq
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   2e-07
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   28   4.1  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   27   9.5  
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  27   9.5  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 51.6 bits (118), Expect(2) = 2e-07
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +1

Query: 145 KLQEPILXLGKEKFSMVXIXXTVKGXGHVAQVYAIRQLFQK 267
           K++EPIL LGKE+F  V I   VKG GH +++YAIRQ   K
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIR-VXXLXPASFEPQKFXGQVAXPR 413
           AISK+L+A+YQKYVDE SKK I+       R +    P   E +KF G  A  R
Sbjct: 48  AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSR 101



 Score = 20.6 bits (41), Expect(2) = 2e-07
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 19 QAVQVFGRK 45
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 222 WSCSTSLRYQTAISKA 269
           WSCSTS+R +T+I KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 189 REFFLAEXKDRFLKFVLQQSGXNQ--VQWAP 103
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 233  HKFTL--SDSYFKS-SDRLLPEICRRSLQEGNQDILVPY 340
            HKF +  +D   KS SD  +P I   + +EG + IL+P+
Sbjct: 5670 HKFNVVVTDGSAKSDSDYTVPSILEFTFKEGEKSILIPF 5708


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 81  SWNAACKRAPIGLG*XQTAAVQTSGTYPFXRQGKILYG 194
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/54 (29%), Positives = 20/54 (37%)
 Frame = +2

Query: 101 TGAHWTWLXPDCCSTNFRNLSFXSARKNSLWLXSXLQXRVVVM*HKFTLSDSYF 262
           T   W+    +C +   R  SF S R    WL          + H F   DSYF
Sbjct: 491 TCKEWSMDRLECTTCGVRRHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 544


>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 378

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/54 (29%), Positives = 20/54 (37%)
 Frame = +2

Query: 101 TGAHWTWLXPDCCSTNFRNLSFXSARKNSLWLXSXLQXRVVVM*HKFTLSDSYF 262
           T   W     +C +   R  SF S+R    WL          + H F   DSYF
Sbjct: 289 TCKEWPMDRLECTTCGVRKHSFTSSRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,871
Number of Sequences: 59808
Number of extensions: 231202
Number of successful extensions: 612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)