Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30900.Seq
(524 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 130 4e-30
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 130 4e-30
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 130 4e-30
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 130 4e-30
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 122 4e-28
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 75 2e-13
BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology dom... 33 0.46
AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein. 33 0.46
AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens ... 33 0.46
AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein. 33 0.46
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 130 bits (313), Expect = 4e-30
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+L LGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIXXTVKGXGHVAQVYAIRQLFQK 267
V I VKG GHVAQ+YAIRQ K
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISK 90
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
+ISKAL+A+YQKYVDEASKK IK R + P E +KF G A R
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR 140
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 130 bits (313), Expect = 4e-30
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+L LGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIXXTVKGXGHVAQVYAIRQLFQK 267
V I VKG GHVAQ+YAIRQ K
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISK 90
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
+ISKAL+A+YQKYVDEASKK IK R + P E +KF G A R
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR 140
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 130 bits (313), Expect = 4e-30
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+L LGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIXXTVKGXGHVAQVYAIRQLFQK 267
V I VKG GHVAQ+YAIRQ K
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISK 90
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
+ISKAL+A+YQKYVDEASKK IK R + P E +KF G A R
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR 140
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 130 bits (313), Expect = 4e-30
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+L LGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIXXTVKGXGHVAQVYAIRQLFQK 267
V I VKG GHVAQ+YAIRQ K
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISK 90
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
+ISKAL+A+YQKYVDEASKK IK R + P E +KF G A R
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR 140
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 122 bits (293), Expect(2) = 4e-28
Identities = 54/81 (66%), Positives = 68/81 (83%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+L LGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIXXTVKGXGHVAQVYAIRQ 255
V I VKG GHVAQ+Y Q
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQ 86
Score = 22.2 bits (45), Expect(2) = 4e-28
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 277 PSTRNM*TKPPRRESRHPST 336
P TRNM + PRR S+ S+
Sbjct: 126 PITRNMWMRLPRRRSKTSSS 145
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 74.5 bits (175), Expect = 2e-13
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSMV 195
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E L L KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 196 XIXXTVKGXGHVAQVYAIRQLFQK 267
I VKG GHV Q+YA+ Q K
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISK 101
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 258 ISKALIAFYQKYVDEASKK 314
ISKAL+ Y KYVDEAS++
Sbjct: 99 ISKALVPCYPKYVDEASEE 117
>BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology domain
containing, family M (with RUN domain) member 1 protein.
Length = 1056
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = -3
Query: 300 RLHISGRRRSELLK*LSDSVNLCYMTTTLXCXXDXNHREFFLAEXKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC NHR + L E RF LQQ
Sbjct: 914 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 967
>AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein.
Length = 628
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = -3
Query: 300 RLHISGRRRSELLK*LSDSVNLCYMTTTLXCXXDXNHREFFLAEXKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC NHR + L E RF LQQ
Sbjct: 486 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 539
>AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens B2
gene partial cDNA, clone B2E. ).
Length = 926
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = -3
Query: 300 RLHISGRRRSELLK*LSDSVNLCYMTTTLXCXXDXNHREFFLAEXKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC NHR + L E RF LQQ
Sbjct: 784 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 837
>AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein.
Length = 1058
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = -3
Query: 300 RLHISGRRRSELLK*LSDSVNLCYMTTTLXCXXDXNHREFFLAEXKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC NHR + L E RF LQQ
Sbjct: 916 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 969
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,401,001
Number of Sequences: 237096
Number of extensions: 1155207
Number of successful extensions: 2518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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