Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30900.Seq
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   116   1e-26
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    30   1.2  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    30   1.2  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  116 bits (278), Expect = 1e-26
 Identities = 50/84 (59%), Positives = 67/84 (79%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSMV 195
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ + P++L+ KLQEP+L +GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 196 XIXXTVKGXGHVAQVYAIRQLFQK 267
            I   V G GHVAQ+YA+RQ   K
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAK 88



 Score = 36.3 bits (80), Expect = 0.013
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKGIKT-S*YHTIRVXXLXPASFEPQKFXGQVAXPR 413
           A++KAL+A+Y KYVDE SK+ +K     +   +    P   E +KF G  A  R
Sbjct: 85  ALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARAR 138


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 231 YMTTTLXCXXDXNHREFFLAEXKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGG 52
           YMTT+       NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 51  G 49
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 231 YMTTTLXCXXDXNHREFFLAEXKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGG 52
           YMTT+       NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 51  G 49
           G
Sbjct: 208 G 208


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 113 WTWLXPDCCSTNFRNLSFXSARKNSLWLXSXLQXRVVVM*HKFTLSDSY 259
           WT    D C  N +N +    R N  WL S L+   +V  H+ +L D Y
Sbjct: 74  WTGKSYDFCYRNPKNATLVGKRFNCTWL-STLEDLKLVGLHEQSLVDLY 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,996,396
Number of Sequences: 27780
Number of extensions: 163527
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)