Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30900.Seq
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   100   7e-22
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            99   9e-22
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    99   2e-21
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    31   0.36 
At2g02860.1 68415.m00236 sucrose transporter / sucrose-proton sy...    27   7.7  

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  100 bits (239), Expect = 7e-22
 Identities = 45/89 (50%), Positives = 63/89 (70%)
 Frame = +1

Query: 1   ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKE 180
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L  P +L++K+ EPIL LGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 181 KFSMVXIXXTVKGXGHVAQVYAIRQLFQK 267
           +F+ V +   V G GH +QVYAIRQ   K
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAK 90



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
           +I+KAL+A+YQKYVDE SKK IK       R   +  P   EP+KF G+ A  R
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSR 140


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =   99 bits (238), Expect = 9e-22
 Identities = 44/89 (49%), Positives = 63/89 (70%)
 Frame = +1

Query: 1   ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKE 180
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L  P +L++K+ EP+L LGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 181 KFSMVXIXXTVKGXGHVAQVYAIRQLFQK 267
           +F+ V +   V G GH +QVYAIRQ   K
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAK 90



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFXGQVAXPR 413
           +I+KAL+A+YQKYVDE SKK IK       R   +  P   EP+KF G+ A  R
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSR 140


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 43/83 (51%), Positives = 61/83 (73%)
 Frame = +1

Query: 19  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILXLGKEKFSMVX 198
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L  P +L++K+ EP+L LGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 199 IXXTVKGXGHVAQVYAIRQLFQK 267
           +     G G+ ++VYAIRQ   K
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAK 90



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 216 GXWSCSTSLRYQTAISKALIAFYQKYVDEASKKGIKTS*YHTIRVXXL-XPASFEPQKFX 392
           G  + S     + +I+KAL+A+YQKYVDE SKK IK       R   +  P   E +KF 
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 393 GQVAXPR 413
           G  A  R
Sbjct: 134 GPGARAR 140


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRL-LQYKLQEPILXLGKEKFSMVXIXXTV 213
           GR+K + A  + + G G  +VN +  D+  P L  +  L  P+     +      I  TV
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRAALLRPLAE--TKTLGRWDIKCTV 367

Query: 214 KGXGHVAQVYAIR 252
           KG G   QV AI+
Sbjct: 368 KGGGTTGQVGAIQ 380


>At2g02860.1 68415.m00236 sucrose transporter / sucrose-proton
           symporter (SUC3) identical to sucrose transporter
           [Arabidopsis thaliana] GI:8052190; similar to sucrose
           transporters from [Oryza sativa (japonica
           cultivar-group)] GI:2723471, [Zea mays] GI:5771354,
           [Triticum aestivum] GI:19548165; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 594

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   QDVSPSRPSKYSDVRKPPPQLRIASVVMECCV*TGAHWTW-LXPDCCSTNFRNLSFXSAR 178
           +  SPS  S  +D         + ++V+ C V  G  + W L     +   + L    A 
Sbjct: 38  ESASPSNHSDSADGESVSKNCSLVTLVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAF 97

Query: 179 KNSLWLXSXLQXRVV 223
            + +WL   +   VV
Sbjct: 98  SSFIWLCGPITGLVV 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,574,130
Number of Sequences: 28952
Number of extensions: 157157
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)