Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30897.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   106   2e-24
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   106   2e-24
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    32   0.055
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   0.39 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   3.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.3  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   8.4  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   8.4  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.4  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  106 bits (254), Expect = 2e-24
 Identities = 48/84 (57%), Positives = 64/84 (76%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRVTVKGGGHVAQVYAIRQLFQR 267
            IRV V GGGHV+Q+YAIRQ   +
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 21/34 (61%), Positives = 29/34 (85%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
           AISKA++A+YQK+VDE SK E++  L+ YDR+LL
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 PASCEPQKFGGPSARA 412
           P   EP+KFGG  ARA
Sbjct: 118 PRRMEPKKFGGHGARA 133


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  106 bits (254), Expect = 2e-24
 Identities = 48/84 (57%), Positives = 64/84 (76%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRVTVKGGGHVAQVYAIRQLFQR 267
            IRV V GGGHV+Q+YAIRQ   +
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 21/34 (61%), Positives = 29/34 (85%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
           AISKA++A+YQK+VDE SK E++  L+ YDR+LL
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 PASCEPQKFGGPSARA 412
           P   EP+KFGG  ARA
Sbjct: 118 PRRMEPKKFGGHGARA 133


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 31.9 bits (69), Expect = 0.055
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 37  GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 216
           G++K++ A      G G   VNG P D+   R++  K      L    + +   +  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 217 GGGHVAQVYAI 249
           GGG   Q  A+
Sbjct: 71  GGGPTGQSGAV 81


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 200 SEXQSRVVVM*H-KFTLSDSYFKGSDRLLPEICR 298
           S+ +   V++ H KF   D+Y KG+  ++P IC+
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 255 LSDSVNLCYMTTTLDCXSDXNH-REFFLAEQ 166
           LS+  N CYM + L C +     R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 103  RLHAAFHDHACNTQLRWRFS 44
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +2

Query: 119 WLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSYFKGSDRLLPEI 292
           W   D  S N    S  S  K S W   E +  +        +  S  K  +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 297 DEASKKEIQDILVQYDRS 350
           DE  KKEIQD+   Y++S
Sbjct: 164 DEKKKKEIQDLKELYEKS 181


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 138 QQSGXNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 7
           Q +G  Q+ W  V T      L + N       ++YLD +D  T
Sbjct: 29  QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,062
Number of Sequences: 5004
Number of extensions: 32980
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)