Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30897.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 4.9
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74) 28 4.9
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 27 8.6
SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74) 27 8.6
SB_6092| Best HMM Match : DUF1610 (HMM E-Value=0.74) 27 8.6
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 27 8.6
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74) 27 8.6
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 63.7 bits (148), Expect = 8e-11
Identities = 29/34 (85%), Positives = 33/34 (97%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
AISK+L+A+YQKYVDE SKKEI+DILVQYDRSLL
Sbjct: 48 AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLL 81
Score = 59.7 bits (138), Expect(2) = 8e-10
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +1
Query: 145 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAIRQLFQR 267
K++EPILLLGKE+F V IRV VKGGGH +++YAIRQ +
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51
Score = 20.6 bits (41), Expect(2) = 8e-10
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 19 QAVQVFGRK 45
Q+VQVFGRK
Sbjct: 3 QSVQVFGRK 11
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 189 REFFLAEQKDRFLKFVLQQSGXNQ--VQWAP 103
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1575
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSYF 262
T W+ +C + R SF S R WL + + H F DSYF
Sbjct: 491 TCKEWSMDRLECTTCGVRRHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 544
>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 378
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S+R WL + + H F DSYF
Sbjct: 289 TCKEWPMDRLECTTCGVRKHSFTSSRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 342
>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 81 SWNAACKRAPIGLG*XQTAAVQTSGTYPFARQGKILYG 194
SW A K+ P G G ++ +G Y R G+ YG
Sbjct: 19 SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 458 HPDXFLEAXR*DFWYWHGHLDHRTSGARTTRVSHQQ 351
H D F + D W HLDH+T+ +T V + Q
Sbjct: 1015 HYDTFSDEEH-DIWVMCKHLDHQTTSPSSTAVPYLQ 1049
>SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 288
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S R WL + + H F DSYF
Sbjct: 118 TCKEWPMDRLECTTCGVRKHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 171
>SB_6092| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 469
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S R WL + + H F DSYF
Sbjct: 284 TCKEWPMDRLECTTCGVRKHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 337
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = -2
Query: 252 SDSVNLCYMTTTLDCXSDXNHR-----EFFLAEQKDRFL 151
S++ LCY+ T ++C D H+ E LA++K + L
Sbjct: 582 SEAEKLCYIETRVECLMDMGHKCSTSTELSLADRKAKVL 620
>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1761
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 458 HPDXFLEAXR*DFWYWHGHLDHRTSGARTTRVSHQQ 351
H D F + D W HLDH+T+ +T V + Q
Sbjct: 675 HYDTFSDEEH-DIWVMCKHLDHQTASPSSTAVPYLQ 709
>SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 637
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSYF 262
T W +C + R SF S R WL + + H F DSYF
Sbjct: 566 TCKEWPMDRLECTTCGVRKHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 619
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,922,404
Number of Sequences: 59808
Number of extensions: 284427
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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