Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30897.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   123   6e-29
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    31   0.46 
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    31   0.46 
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    29   1.9  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        29   1.9  
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    27   10.0 

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  123 bits (297), Expect = 6e-29
 Identities = 52/80 (65%), Positives = 70/80 (87%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ + P++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 196 XIRVTVKGGGHVAQVYAIRQ 255
            IR+ V GGGHVAQ+YA+RQ
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQ 84



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/34 (58%), Positives = 29/34 (85%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
           A++KAL+A+Y KYVDE SK+E+++I   YD+SLL
Sbjct: 85  ALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLL 118


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 231 YMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGG 52
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 51  G 49
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 231 YMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGG 52
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 51  G 49
           G
Sbjct: 208 G 208


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 225 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 225 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 291 YVDEASKKEIQDILVQYDRSL 353
           + DE  +KE+ D+  QYDRS+
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSI 171


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 88   MLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGG 225
            ++ +   P+D +  R + ++L+ P+L LG E +  + + + V  GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 113 WTWLXPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTLSDSY 259
           WT    D C  N +N +    R N  WL +    ++V + H+ +L D Y
Sbjct: 74  WTGKSYDFCYRNPKNATLVGKRFNCTWLSTLEDLKLVGL-HEQSLVDLY 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,763,486
Number of Sequences: 27780
Number of extensions: 197429
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)