Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30897.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 6/25 (24%), Positives = 12/25 (48%)
 Frame = +1

Query: 334 YNTIGVCWWLTRVVRAPEVRWSKCP 408
           +  + +C+W+  V    E +W   P
Sbjct: 480 FGLLNICYWVIYVTYQEEFKWQDSP 504


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 231  YMTTTLDCXSDXNHREFFLAEQKD 160
            ++TTT+DC +   + E  + +QK+
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 48  FLTSEYLDGLDGLT 7
           F++S +L+GL+GLT
Sbjct: 391 FVSSPFLNGLEGLT 404


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 120  QVQWAPVYTQHSMTTLAIRNCGGGFLTSE 34
            Q+     YTQ+S+   A    G G ++ E
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEE 1071


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,932
Number of Sequences: 438
Number of extensions: 2517
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)