Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30897.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 108 2e-24
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 107 3e-24
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 107 5e-24
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 37 0.009
At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related conta... 32 0.25
At1g43570.1 68414.m05001 hypothetical protein 29 2.3
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 28 3.0
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 28 4.0
At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 9.3
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 9.3
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 108 bits (259), Expect = 2e-24
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +1
Query: 1 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKE 180
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 181 KFSMVXIRVTVKGGGHVAQVYAIRQ 255
+F+ V +R+ V GGGH +QVYAIRQ
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQ 86
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/34 (76%), Positives = 33/34 (97%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
+I+KAL+A+YQKYVDE SKKEI+DILV+YDR+LL
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 365 PASCEPQKFGGPSARA 412
P CEP+KFGG AR+
Sbjct: 124 PRRCEPKKFGGRGARS 139
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 107 bits (258), Expect = 3e-24
Identities = 46/85 (54%), Positives = 66/85 (77%)
Frame = +1
Query: 1 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKE 180
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 181 KFSMVXIRVTVKGGGHVAQVYAIRQ 255
+F+ V +R+ V GGGH +QVYAIRQ
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQ 86
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/34 (76%), Positives = 33/34 (97%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
+I+KAL+A+YQKYVDE SKKEI+DILV+YDR+LL
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 365 PASCEPQKFGGPSARA 412
P CEP+KFGG AR+
Sbjct: 124 PRRCEPKKFGGRGARS 139
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 107 bits (256), Expect = 5e-24
Identities = 45/79 (56%), Positives = 64/79 (81%)
Frame = +1
Query: 19 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVX 198
++VQ FGRKKTATAV YCKRG GM+++NG P++L P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 199 IRVTVKGGGHVAQVYAIRQ 255
+R+ GGG+ ++VYAIRQ
Sbjct: 68 MRIRATGGGNTSRVYAIRQ 86
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/34 (73%), Positives = 33/34 (97%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIQDILVQYDRSLL 356
+I+KAL+A+YQKYVDE SKKEI+DIL++YDR+LL
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLL 120
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 365 PASCEPQKFGGPSARA 412
P CE +KFGGP ARA
Sbjct: 124 PRRCESKKFGGPGARA 139
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 216
GR+K + A + + G G +VN + D+ P +L ++ L + I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 217 GGGHVAQVYAIR 252
GGG QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380
>At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related contains
weak similarity to violaxanthin de-epoxidase precursor
gi|1438875|gb|AAC49373
Length = 522
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 343 IGVCWWLTRVVRAPEVRWSKCPCQYQKSYR*ASRKXSGWY 462
+G W RVV + + PCQYQ YR K S WY
Sbjct: 338 LGELEWSWRVVAGQNPAYDQFPCQYQLFYR-GKGKSSFWY 376
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 373 RRGSATSKLLSYCTRMSWISFFEASSTYFW*KAIR 269
R S T + LSYC R+ I S T FW A R
Sbjct: 20 RISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 169 LGKEKFSMVXIRVTVKGGGHVAQVYAIRQLFQ 264
+G E+ V I ++ GGGH A AIR F+
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 160 ILLLGKEKFSMVXIRVTVKGGGHVAQVYAIRQLFQ 264
++ +G E+ V I ++ GGGH A AIR F+
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK 94
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 80 VMECCV*TGAHWTWLXPDCCSTNFRNLSF 166
+ E C +TW PDCC + N+SF
Sbjct: 359 ISESCPNKTDAYTW--PDCCMVRYSNVSF 385
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +2
Query: 110 HWTWLXPDCCSTNFRNLSFCSARKNSLW 193
+W W DC F +L F +N W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,512
Number of Sequences: 28952
Number of extensions: 187465
Number of successful extensions: 526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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