Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30894.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 72 5e-14
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 72 5e-14
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 32 0.048
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 28 1.0
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 2.4
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 26 3.2
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.2
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 7.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.3
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 72.1 bits (169), Expect = 5e-14
Identities = 36/87 (41%), Positives = 50/87 (57%)
Frame = +3
Query: 27 IQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXXXYX 206
+Q+VQ FG+K A AVA+CK G G+++VNG PL LV P +L+ K+ EP
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 207 XXXXXXXXXXHVAQVYLSXQAISKALI 287
HV+Q+Y QAISKA++
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIV 87
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK + L+ YDR+LLVADPRR EPKKF G QKSYR
Sbjct: 98 SKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 72.1 bits (169), Expect = 5e-14
Identities = 36/87 (41%), Positives = 50/87 (57%)
Frame = +3
Query: 27 IQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXXXYX 206
+Q+VQ FG+K A AVA+CK G G+++VNG PL LV P +L+ K+ EP
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 207 XXXXXXXXXXHVAQVYLSXQAISKALI 287
HV+Q+Y QAISKA++
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIV 87
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK + L+ YDR+LLVADPRR EPKKF G QKSYR
Sbjct: 98 SKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 32.3 bits (70), Expect = 0.048
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 95 WNAACXRAAIGLGLTQTAAVQTSGTYPFARQRKNSLWLKSEXQS 226
W+ AC AA G + T A+ T+P + SLW++ E ++
Sbjct: 83 WHGACFNAATG-DVEDTPAIAALRTFPVTEEGDGSLWIEVEDKN 125
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 244 HKFTYQXKLFQRL*FAFYQKYVDEALQRRKS 336
H+F Q K F+ + +A ++K+VD+ +R S
Sbjct: 41 HEFDEQKKSFEIINYAGHEKFVDDITERESS 71
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 402 FLGSQRRGSATSKLLSYGTRMS*FPSLEGFVYIFLVEG 289
F + SA LL+YG L+G+ Y+FL+EG
Sbjct: 190 FYAAANVSSAFGGLLAYGVFHIKGGKLQGWQYLFLIEG 227
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 48 GRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYK 158
G++K++ A G G VNG P D+ R++ K
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK 48
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 236 SCSTSLPIXPSYFKGSDSPSTRNM*TKPSKEGNQDILV 349
S +L P+Y + STRN+ PS N D+ +
Sbjct: 566 SVQRALSSVPNYSSSLSNISTRNLNIPPSNANNDDVSI 603
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 134 LTQTAAVQTSGTYPFARQRKNSLWLKSEXQSR 229
L+Q + T + PF ++ S W K+E SR
Sbjct: 27 LSQRSKTSTRSSKPFLQRLFPSTWFKNESSSR 58
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 176 KDRFLKFVLQQSGLNQVQWPPVXTQHSMTTLAIRNCVGGFFT 51
+++FLK L++ G+N PPV S T GF T
Sbjct: 209 EEQFLKLKLRKPGVNSRPAPPVQDVTSSTKYGSSTGSSGFNT 250
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 344 LVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKS 442
L+PYD L V PR P+ G VP+ D ++
Sbjct: 560 LLPYDHLLHVRQPRLIPPEDEDG-VPIFDEDRA 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,944
Number of Sequences: 5004
Number of extensions: 40297
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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