Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30894.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 72 4e-13
11_01_0155 - 1287003-1287452 72 4e-13
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 30 1.4
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 30 1.4
05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265 29 2.4
01_06_0683 - 31173763-31174635,31175146-31175436 29 3.2
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810... 28 5.6
08_02_0311 - 15635165-15635590,15635777-15638698 27 7.5
09_02_0168 - 5253588-5254688 27 9.9
>12_01_0152 - 1168928-1169377
Length = 149
Score = 71.7 bits (168), Expect = 4e-13
Identities = 40/107 (37%), Positives = 56/107 (52%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EP
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
+Q+Y QAI+KAL+ + + KKE+K
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEA-SKKEVK 112
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DI YDR+LLVADPRRCEPKKF G QKSYR
Sbjct: 107 SKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 71.7 bits (168), Expect = 4e-13
Identities = 40/107 (37%), Positives = 56/107 (52%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EP
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
+Q+Y QAI+KAL+ + + KKE+K
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEA-SKKEVK 112
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DI YDR+LLVADPRRCEPKKF G QKSYR
Sbjct: 107 SKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 197 SLWLKSEXQSRWWSCSTSLPIXPSYFKGSDSPSTRNM*TKPSKEGNQDILVPYDRSLLVA 376
+LWL S W++ S L P +F + + KEG Q L P D +
Sbjct: 305 ALWLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTV 364
Query: 377 DPRRCEP 397
DP + P
Sbjct: 365 DPMKEPP 371
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 122 WPPVXTQHSMTTLAIRNCVGGFFTSEYLD 36
W V T H +T +A R+CVG F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265
Length = 400
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 161 SGTYPFARQRKNSLWLKSEXQSRWWSCSTSLPIXPSYFKGSDSPS 295
S Y + + +N + +E WW CS+S SY+ S S S
Sbjct: 26 SQRYGYLERIRNLSVVSAEAGRWWWPCSSSSTARSSYYSSSMSSS 70
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 25 PSKPSKYSDVKKPPTQLRIASV 90
PSKP+K D PP Q +++SV
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV 245
>08_02_1400 +
26779193-26779245,26779622-26779766,26779950-26781059,
26781153-26781404,26782150-26782230,26782623-26782770,
26782858-26783264,26783557-26783613
Length = 750
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 164 GTYPFARQRKNSLWLKSEXQSRWWSCSTSLPIXPSYFKGSDSPSTRNM*TKPSKEG 331
G+Y +R + + SR + CS++LP+ P+ + + +PS+R + + S EG
Sbjct: 36 GSYGDMARRGRMIPFRLMGSSRLYECSSTLPVNPA--EEAPTPSSRPVSSPRSFEG 89
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 4 CRRQDVXPSKPSKYSDVKKPPTQ 72
C++ D+ P P Y VK PT+
Sbjct: 446 CKKHDIEPRNPDSYFSVKGDPTK 468
>09_02_0168 - 5253588-5254688
Length = 366
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 29 PSRPSIRT*KNRQRSCVLQAW 91
P P+++T NR R CV Q W
Sbjct: 105 PMDPALKTDANRVRGCVSQVW 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,369,530
Number of Sequences: 37544
Number of extensions: 308877
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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