Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30894.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)                   29   1.9  
SB_15308| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-33)                 29   1.9  
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)          28   5.8  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/43 (67%), Positives = 31/43 (72%)
 Frame = +2

Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
           SK+  +DILV YDRSLLVADPRR E KKF GP      QKSYR
Sbjct: 65  SKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 187 KEKFSMVEIRVTVKVVVM*HKFTYQXKLFQRL*FAFYQKYVDEALQR 327
           KE+F  V+IRV VK      +     +   +   A+YQKYVDE  ++
Sbjct: 21  KERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKK 67


>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
          Length = 665

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 314 KPSKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQK 439
           +PS+E  QDI +P   +    D ++  PK+   P P P+N K
Sbjct: 310 QPSEE-KQDIPLPSKPTAGARDMKKVLPKELKKPAPPPENSK 350


>SB_15308| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-33)
          Length = 429

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 270 ISKALIRLLPEICRRSPPKKEIKTS*YHTIGVCWWLTRVAASPRSSVVQC 419
           IS A   L P+I RR    +E K       GVCW +  +A++  + VV C
Sbjct: 106 ISIATSTLTPDIARRLKHSQEKKGKKREKRGVCWSVMGLASTVLNVVVCC 155


>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
          Length = 1264

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 322 GGLRLHISGRRRIRAFEI 269
           GGLR H SGR+R R  EI
Sbjct: 449 GGLRKHFSGRKRFRFCEI 466


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 197 NFSFAEQKDRFLKFVLQQSGLNQ--VQWPP 114
           +F F + KDR+LK  L++ G  Q   QW P
Sbjct: 13  SFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,230
Number of Sequences: 59808
Number of extensions: 327931
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)