Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30894.Seq
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 100 7e-21
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 100 7e-21
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 100 7e-21
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 100 7e-21
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 87 4e-17
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 76 9e-14
X90568-1|CAA62188.1|26926|Homo sapiens titin protein. 30 6.1
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 30 6.1
AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein. 30 6.1
AF225896-1|AAG33700.1| 1735|Homo sapiens tensin protein. 29 8.1
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 99.5 bits (237), Expect = 7e-21
Identities = 51/107 (47%), Positives = 67/107 (62%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
+ P+Q+VQVFGRKKTA AVA+CKRG+G+++VNGRPL+++ PR LQYKL EP
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
HVAQ+Y Q+ISKAL+ + + KKEIK
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEA-SKKEIK 109
Score = 58.4 bits (135), Expect = 2e-08
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DIL+ YDR+LLVADPRRCE KKF GP QKSYR
Sbjct: 104 SKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 99.5 bits (237), Expect = 7e-21
Identities = 51/107 (47%), Positives = 67/107 (62%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
+ P+Q+VQVFGRKKTA AVA+CKRG+G+++VNGRPL+++ PR LQYKL EP
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
HVAQ+Y Q+ISKAL+ + + KKEIK
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEA-SKKEIK 109
Score = 58.4 bits (135), Expect = 2e-08
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DIL+ YDR+LLVADPRRCE KKF GP QKSYR
Sbjct: 104 SKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 99.5 bits (237), Expect = 7e-21
Identities = 51/107 (47%), Positives = 67/107 (62%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
+ P+Q+VQVFGRKKTA AVA+CKRG+G+++VNGRPL+++ PR LQYKL EP
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
HVAQ+Y Q+ISKAL+ + + KKEIK
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEA-SKKEIK 109
Score = 58.4 bits (135), Expect = 2e-08
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DIL+ YDR+LLVADPRRCE KKF GP QKSYR
Sbjct: 104 SKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 99.5 bits (237), Expect = 7e-21
Identities = 51/107 (47%), Positives = 67/107 (62%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
+ P+Q+VQVFGRKKTA AVA+CKRG+G+++VNGRPL+++ PR LQYKL EP
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
HVAQ+Y Q+ISKAL+ + + KKEIK
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEA-SKKEIK 109
Score = 58.4 bits (135), Expect = 2e-08
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DIL+ YDR+LLVADPRRCE KKF GP QKSYR
Sbjct: 104 SKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 87.0 bits (206), Expect = 4e-17
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXX 197
+ P+Q+VQVFGRKKTA AVA+CKRG+G+++VNGRPL+++ PR LQYKL EP
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 XYXXXXXXXXXXXHVAQVYLSXQAI 272
HVAQ+Y Q +
Sbjct: 64 AGVDIRVRVKGGGHVAQIYGESQEL 88
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 75.8 bits (178), Expect = 9e-14
Identities = 49/146 (33%), Positives = 68/146 (46%)
Frame = +3
Query: 27 IQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXXXYX 206
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 207 XXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIKTS*YHTIGVCWWLTRV 386
HV Q+Y Q ISKAL+ P+ + +EIK + CWW T V
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEA--SEEIKDT---LTRPCWWFTPV 132
Query: 387 AASPRSSVVQCPCQITRNLTGXAFKK 464
A +PR+ P TRN + KK
Sbjct: 133 AMNPRNLQALVPVLTTRNHSSKPIKK 158
>X90568-1|CAA62188.1|26926|Homo sapiens titin protein.
Length = 26926
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 76 RIASVVMECCVXTGGHWTWFNPDCCSTNFRNLSFCSAKEKFSMV 207
RI V+E G WT NPDC ST F S ++ F V
Sbjct: 9445 RIKGYVIEKRTIDGKAWTKVNPDCGSTTFVVPDLLSEQQYFFRV 9488
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 76 RIASVVMECCVXTGGHWTWFNPDCCSTNFRNLSFCSAKEKFSMV 207
RI V+E G WT NPDC ST F S ++ F V
Sbjct: 16869 RIKGYVIEKRTIDGKAWTKVNPDCGSTTFVVPDLLSEQQYFFRV 16912
>AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein.
Length = 26926
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 76 RIASVVMECCVXTGGHWTWFNPDCCSTNFRNLSFCSAKEKFSMV 207
RI V+E G WT NPDC ST F S ++ F V
Sbjct: 9445 RIKGYVIEKRTIDGKAWTKVNPDCGSTTFVVPDLLSEQQYFFRV 9488
>AF225896-1|AAG33700.1| 1735|Homo sapiens tensin protein.
Length = 1735
Score = 29.5 bits (63), Expect = 8.1
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +2
Query: 164 GTYPFARQRKNSLWLKSEXQSRWWSCSTSLPIXPSYFKGSDSPSTR-NM*TKPSKEGNQD 340
G Y R+ +L +S + S P+ P+Y+ G SP+T + + ++G+
Sbjct: 1324 GGYSTPEDRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPT 1383
Query: 341 ILVPYDRSLLVADPRRCEPK--KFXGPV--PVPDNQKS 442
+P R + V D P G V PVP S
Sbjct: 1384 PALPEKRRMSVGDRAGSLPNYATINGKVASPVPSGMSS 1421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,579,753
Number of Sequences: 237096
Number of extensions: 1670029
Number of successful extensions: 3031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3016
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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