Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30894.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    86   1e-17
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 40/87 (45%), Positives = 56/87 (64%)
 Frame = +3

Query: 27  IQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXXXYX 206
           +Q+VQ FGRKKTA AVA+CK+G G+++VNGRPL+ + P++L+ KLQEP            
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 207 XXXXXXXXXXHVAQVYLSXQAISKALI 287
                     HVAQ+Y   QA++KAL+
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALV 91



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 25/43 (58%), Positives = 28/43 (65%)
 Frame = +2

Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
           SK   ++I   YD+SLLVADPRR E KKF GP      QKSYR
Sbjct: 102 SKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 266 SYFKGSDSPSTRNM*TKPSKEGNQDILVPYD 358
           SYF  +  P+T     K S+ G++DI +P D
Sbjct: 414 SYFSATPKPATTTNTRKLSENGSEDIEMPSD 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,305
Number of Sequences: 27780
Number of extensions: 239579
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)