Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30894.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 74 5e-14
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 74 7e-14
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 74 7e-14
At2g33100.1 68415.m04058 cellulose synthase family protein simil... 31 0.51
At1g47730.1 68414.m05306 F-box family protein contains Pfam PF00... 29 2.7
At4g15980.1 68417.m02426 pectinesterase family protein contains ... 28 3.6
At1g51340.2 68414.m05773 MATE efflux family protein contains Pfa... 28 3.6
At1g51340.1 68414.m05774 MATE efflux family protein contains Pfa... 28 3.6
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 4.7
At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate synth... 27 6.2
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 6.2
At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate synth... 27 8.3
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 74.1 bits (174), Expect = 5e-14
Identities = 39/103 (37%), Positives = 57/103 (55%)
Frame = +3
Query: 30 QAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXXXXXYXX 209
++VQ FGRKKTA AV YCKRG GM+++NG P++L P +L++K+ EP
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 210 XXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
+ ++VY Q+I+KAL+ + KKEIK
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQ-SKKEIK 109
Score = 56.8 bits (131), Expect = 9e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DIL+ YDR+LLVADPRRCE KKF GP QKSYR
Sbjct: 104 SKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 73.7 bits (173), Expect = 7e-14
Identities = 40/109 (36%), Positives = 59/109 (54%)
Frame = +3
Query: 12 ARRXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXX 191
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EP
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 192 XXXYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
H +QVY Q+I+KAL+ + KKEIK
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQ-SKKEIK 109
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DILV YDR+LLVADPRRCEPKKF G QKSYR
Sbjct: 104 SKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 73.7 bits (173), Expect = 7e-14
Identities = 40/109 (36%), Positives = 59/109 (54%)
Frame = +3
Query: 12 ARRXPIQAVQVFGRKKTANAVAYCKRGHGMLRVNGRPLDLV*PRLLQYKLQEPXXXXXXX 191
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EP
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 192 XXXYXXXXXXXXXXXHVAQVYLSXQAISKALIRLLPEICRRSPPKKEIK 338
H +QVY Q+I+KAL+ + KKEIK
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQ-SKKEIK 109
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +2
Query: 320 SKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYR 448
SK+ +DILV YDR+LLVADPRRCEPKKF G QKSYR
Sbjct: 104 SKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>At2g33100.1 68415.m04058 cellulose synthase family protein similar
to gi:2827143 from Arabidopsis thaliana (Ath-B)
Length = 1036
Score = 31.1 bits (67), Expect = 0.51
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 4 CRRQDVXPSKPSKYSDVKKPPTQ 72
CR+ D+ P P Y +KK PT+
Sbjct: 332 CRKHDIEPRNPDSYFSIKKDPTK 354
>At1g47730.1 68414.m05306 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; identical to
hypothetical protein GB:AAD46016 GI:5668790 from
(Arabidopsis thaliana)
Length = 391
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 185 QRKNSLWLKSEXQSRWWSCSTSLPI 259
+ S+W+ + R WSC T LPI
Sbjct: 282 KNSRSMWVLENVEQREWSCHTYLPI 306
>At4g15980.1 68417.m02426 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 701
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 170 YPFARQRKNSLWLKSEXQSRWWSCSTSLPIXPSYFKGSDSPST 298
+PF R R+ L + SR S +S P+ DSPST
Sbjct: 210 FPFLRSRRGRLGILGSGSSRDESVGSSQDSPPNEDSSDDSPST 252
>At1g51340.2 68414.m05773 MATE efflux family protein contains Pfam
profile PF01554: MatE
Length = 515
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 438 FWLSGTGTGPXNFLGS 391
FW GTGTGP +FL S
Sbjct: 500 FWRIGTGTGPWSFLRS 515
>At1g51340.1 68414.m05774 MATE efflux family protein contains Pfam
profile PF01554: MatE
Length = 509
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 438 FWLSGTGTGPXNFLGS 391
FW GTGTGP +FL S
Sbjct: 494 FWRIGTGTGPWSFLRS 509
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 28 SKPSKYSDVKKPPTQLRIASVVMECCVXTGGHWTWFNPDCCSTNFRNLSF 177
+KP + SD K T ++ C T G+ W PDCC + N+SF
Sbjct: 80 TKPERCSDCIKGSTD----GLLRSCPNQTVGY-VW--PDCCMVRYSNISF 122
>At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
ACC synthase from Malus x domestica, GI:1658062
[U73816], Pyrus pyrifolia GI:4586411
Length = 447
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 463 KXSGLVSSPXSCCHCXXIGW 522
K L SP S CHC +GW
Sbjct: 398 KELNLNISPGSSCHCSEVGW 417
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 275 KGSDSPSTRNM*TKPSKEGNQDILVPYDRSLLVADPRRCEPKKFXGPVPVPDNQKSYRLX 454
K + PS RN P K N ++L P D + +D P+K P+ + ++K R+
Sbjct: 115 KENSDPSRRN----PRKNLNDEVLKPLDLNREDSDSNSRSPRKSFKPLDLKLDEKFERI- 169
Query: 455 LQEXPPG 475
PPG
Sbjct: 170 ---CPPG 173
>At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
GI:1173638 [GB:U35779] from [Triticum aestivum] (Plant
Mol. Biol. 31 (5), 1009-1020 (1996)), GI:1813331 from
Vigna radiata
Length = 557
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 487 PXSCCHCXXIGW 522
P SCCHC GW
Sbjct: 515 PGSCCHCIEPGW 526
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,640
Number of Sequences: 28952
Number of extensions: 232086
Number of successful extensions: 500
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -