Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30891.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.50 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   2.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   2.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   3.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.2  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    21   8.1  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 159 RFLKFVLQQSGXNQVXWAPVYTQHSMTTLAIR 64
           R++K VL +SG +   +    T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 263 KGSDSPSTRNM*TKPQRRXSKTS*Y 337
           K  DSP+ R + T+PQ + +  + Y
Sbjct: 119 KNDDSPALRALLTRPQAKKTPPNQY 143


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 263 KGSDSPSTRNM*TKPQRRXSKTS*Y 337
           K  DSP+ R + T+PQ + +  + Y
Sbjct: 119 KNDDSPALRALLTRPQAKKTPPNQY 143


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 263 KGSDSPSTRNM*TKPQRRXSKTS*Y 337
           K  DSP+ R + T+PQ + +  + Y
Sbjct: 119 KDDDSPALRALLTRPQAKKTPPNQY 143


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +2

Query: 14  PSRP-SKYSDVRKPPPQLRI 70
           P  P SK S    PPPQL +
Sbjct: 218 PDSPNSKKSATPSPPPQLEV 237


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 246 SVNLCYMTTTLDCHSDXNXREF 181
           +V +C+    + CH D   R F
Sbjct: 2   AVAICFALMCIACHPDIQERIF 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,901
Number of Sequences: 336
Number of extensions: 1897
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)