Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30891.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   166   2e-42
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   166   2e-42
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    29   0.51 
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.3  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.4  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  166 bits (403), Expect = 2e-42
 Identities = 79/140 (56%), Positives = 101/140 (72%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKFSXV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG P  LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLVAXPXR 375
            IRV V G GHV+Q+YAIRQ   +   A+YQK+VDE SK  +K  L+ YDR+ LVA P R
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 376 CEPQKFGGPGAXARXQKSXR 435
            EP+KFGG GA AR QKS R
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  166 bits (403), Expect = 2e-42
 Identities = 79/140 (56%), Positives = 101/140 (72%)
 Frame = +1

Query: 16  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKFSXV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG P  LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLVAXPXR 375
            IRV V G GHV+Q+YAIRQ   +   A+YQK+VDE SK  +K  L+ YDR+ LVA P R
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 376 CEPQKFGGPGAXARXQKSXR 435
            EP+KFGG GA AR QKS R
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 37  GRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKFSXVXIRVTVK 216
           G++K++ A      G G   VNG P D+   R++  K      L    + +   +  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 217 GXGHVAQVYAI 249
           G G   Q  A+
Sbjct: 71  GGGPTGQSGAV 81


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 138 QQSGXNQVXWAPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGXT 7
           Q +G  Q+ W  V T      L + N       ++YLD +D  T
Sbjct: 29  QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 103  RLHAAFHDHACNTQLRWRFS 44
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 255 LSDSVNLCYMTTTLDCHS-DXNXREFFLAEQ 166
           LS+  N CYM + L C +     R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,763
Number of Sequences: 5004
Number of extensions: 28067
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)