Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30891.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          175   1e-44
11_01_0155 - 1287003-1287452                                          175   1e-44
07_03_0227 - 15398371-15398925                                         30   1.2  
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345     28   3.6  
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533...    27   6.3  
03_06_0097 - 31632238-31632525,31633386-31633769                       27   8.4  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           27   8.4  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  175 bits (427), Expect = 1e-44
 Identities = 81/143 (56%), Positives = 102/143 (71%)
 Frame = +1

Query: 7   RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKF 186
           R P   VQ FGRKKTA AV+YCK G G+++VNG P +L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SXVXIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLVAX 366
             + +R+ V+G G  +Q+YAIRQ   +   A+YQKYVDEASKK +KDI   YDR+ LVA 
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 367 PXRCEPQKFGGPGAXARXQKSXR 435
           P RCEP+KFGG GA AR QKS R
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  175 bits (427), Expect = 1e-44
 Identities = 81/143 (56%), Positives = 102/143 (71%)
 Frame = +1

Query: 7   RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKF 186
           R P   VQ FGRKKTA AV+YCK G G+++VNG P +L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SXVXIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLVAX 366
             + +R+ V+G G  +Q+YAIRQ   +   A+YQKYVDEASKK +KDI   YDR+ LVA 
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 367 PXRCEPQKFGGPGAXARXQKSXR 435
           P RCEP+KFGG GA AR QKS R
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 157 VPXVCTAAVWXXPSXMGARLHAAFH--DHACNTQLRWRF 47
           +P +C A  W  P+   A  H  FH     C+ + RW +
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61


>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
          Length = 347

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 234 TSLRYQTAISKALIRLLPEICRRSLKEGXQRHPSTIR*EFXGG*XASLRAPEVRWSRCPC 413
           + L +Q     AL+RL  E  R  L+E  +RH   +           LRA E    R  C
Sbjct: 146 SQLYHQGVEIDALVRLESERMRAGLEEARRRHVRAVVSTVERAAAGRLRAAEAELERARC 205

Query: 414 QXPEI 428
           +  E+
Sbjct: 206 RNMEL 210


>01_05_0500 +
           22752190-22752329,22752957-22753032,22753292-22753351,
           22754718-22754882,22756299-22756358
          Length = 166

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 111 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 25
           W  V T H +T +A R+C G F   ++LD
Sbjct: 18  WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +1

Query: 19  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLV---XPRLLQYKLXEPILLLGKEKFS 189
           Q +   GR+KTA A    + G G + +N R         P  ++Y    P++ LG E   
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFENSY 154

Query: 190 XVXIRVTVKGXGHVAQVYAI 249
            V ++  V G G   Q  AI
Sbjct: 155 DVFVK--VHGGGLSGQAQAI 172


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 396 WSRCPCQXPEIXPLKPSKKTIG 461
           WS  P   P   P KPS++T+G
Sbjct: 59  WSLSPSPSPPPPPTKPSRRTLG 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,319
Number of Sequences: 37544
Number of extensions: 213531
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)