Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30891.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   8e-31
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)            29   1.6  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   29   2.1  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  130 bits (313), Expect = 8e-31
 Identities = 63/97 (64%), Positives = 73/97 (75%)
 Frame = +1

Query: 145 KLXEPILLLGKEKFSXVXIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIK 324
           K+ EPILLLGKE+F  V IRV VKG GH +++YAIRQ   +   A+YQKYVDE SKK I+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 325 DILVPYDRSXLVAXPXRCEPQKFGGPGAXARXQKSXR 435
           DILV YDRS LVA P R E +KFGGPGA +R QKS R
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
          Length = 263

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 73  KRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKFSXVXIRVTVKGXGHVAQVYAIR 252
           ++G+G++RV GR    +    + Y+L  PI+L  K   + + I    +  GH+ Q   + 
Sbjct: 86  QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQESVLS 141

Query: 253 QL 258
            L
Sbjct: 142 SL 143


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 201 QSDSQGXWSCSTSLRYQTAISKA-LIRLLPEICR 299
           +S +   WSCSTS+R +T+I KA  + LL  + R
Sbjct: 148 RSAALALWSCSTSMRNRTSIFKAGSVPLLARLIR 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,175
Number of Sequences: 59808
Number of extensions: 234980
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)