Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30891.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   182   1e-46
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           182   2e-46
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   181   2e-46
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    33   0.081

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  182 bits (443), Expect = 1e-46
 Identities = 85/145 (58%), Positives = 108/145 (74%)
 Frame = +1

Query: 1   ARRXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKE 180
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P +L  P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 181 KFSXVXIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLV 360
           +F+ V +R+ V G GH +QVYAIRQ   +   A+YQKYVDE SKK IKDILV YDR+ LV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 361 AXPXRCEPQKFGGPGAXARXQKSXR 435
           A P RCEP+KFGG GA +R QKS R
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  182 bits (442), Expect = 2e-46
 Identities = 84/145 (57%), Positives = 108/145 (74%)
 Frame = +1

Query: 1   ARRXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKE 180
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P +L  P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 181 KFSXVXIRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLV 360
           +F+ V +R+ V G GH +QVYAIRQ   +   A+YQKYVDE SKK IKDILV YDR+ LV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 361 AXPXRCEPQKFGGPGAXARXQKSXR 435
           A P RCEP+KFGG GA +R QKS R
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  181 bits (441), Expect = 2e-46
 Identities = 83/139 (59%), Positives = 106/139 (76%)
 Frame = +1

Query: 19  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKFSXVX 198
           ++VQ FGRKKTATAV YCKRG GM+++NG P +L  P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 199 IRVTVKGXGHVAQVYAIRQLFQRL*FAFYQKYVDEASKKGIKDILVPYDRSXLVAXPXRC 378
           +R+   G G+ ++VYAIRQ   +   A+YQKYVDE SKK IKDIL+ YDR+ LVA P RC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 379 EPQKFGGPGAXARXQKSXR 435
           E +KFGGPGA AR QKS R
Sbjct: 128 ESKKFGGPGARARFQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 33.5 bits (73), Expect = 0.081
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 37  GRKKTATAVAYCKRGHGMLRVNGRPXDLVXPRLLQYKLXEPILLLGKEKFSXVXIRVTVK 216
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +      I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 217 GXGHVAQVYAIR 252
           G G   QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,145
Number of Sequences: 28952
Number of extensions: 160506
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)