Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30888.Seq
         (447 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    20   9.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   9.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    20   9.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   9.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 92  WLICLFFHLWV 60
           W+ CL F  WV
Sbjct: 131 WMWCLIFAFWV 141


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 331 LHHHYVFXESLTRTRXGNISDSLR 260
           L   + F + LTR R   I++SLR
Sbjct: 198 LEKEFHFNKYLTRRRRIEIAESLR 221


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 106 TREYTVNLHKRLHGVGFKKACPKSNQR 186
           TR   +  H R H    + ACP  N+R
Sbjct: 357 TRSDELQRHLRTHTGEKRFACPICNKR 383


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 331 LHHHYVFXESLTRTRXGNISDSLR 260
           L   + F + LTR R   I++SLR
Sbjct: 198 LEKEFHFNKYLTRRRRIEIAESLR 221


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 331 LHHHYVFXESLTRTRXGNISDSLR 260
           L   + F + LTR R   I++SLR
Sbjct: 198 LEKEFHFNKYLTRRRRIEIAESLR 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,493
Number of Sequences: 336
Number of extensions: 1404
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)