Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30888.Seq
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    53   2e-08

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = +2

Query: 83  KSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR*N-SLKQILW 259
           KSAIN+++  +  +        +  KKRAPRAIKEI  FA+K M   ++R + SL + +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 260 SKGVXNVP 283
            +G+ NVP
Sbjct: 66  KRGIRNVP 73



 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = +1

Query: 97  RVVTREYTVNLHKRLHGVGFKKACPKS 177
           +VVTR+YT+++HKRL+GV FKK  P++
Sbjct: 11  QVVTRDYTIHMHKRLYGVSFKKRAPRA 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,069
Number of Sequences: 5004
Number of extensions: 24807
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)