Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30888.Seq
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                       62   3e-10
08_02_1181 - 24985963-24986242,24987109-24987197                       59   1e-09
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     54   5e-08
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529...    27   6.9  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
 Frame = +1

Query: 100 VVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TNSLV*GSXKC 279
           VVTREYT+NLHKRLHG  FKK  P + +   K   K  G     +++   N  +  S   
Sbjct: 16  VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK-LNKHIWSSGIR 74

Query: 280 SLSVSV-*GFXRRRNDDXDSAXXLFTLVTY--VPVASIKGLQTXML 408
           S+   V     RRRND+ D+   L++LVT   VP   +KGL T ++
Sbjct: 75  SVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLV 120


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
 Frame = +1

Query: 94  KRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TNSLV*GSX 273
           + VVTREYT+NLHKRLH   FKK  P + +   K   K  G +   +++   N  +  S 
Sbjct: 12  EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVK-LNKHIWSSG 70

Query: 274 KCSLSVSV-*GFXRRRNDDXDSAXXLFTLVTY--VPVASIKGLQTXML 408
             S+   V     R+RND+ D+   L++LVT   VP   +KGL T ++
Sbjct: 71  IRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVV 118


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +2

Query: 122 LIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR*N-SLKQILWSKGVXNVP 283
           LI+    +V   KK+AP AIKEIRKFA+K MG  DIR +  L + +W+ G+ +VP
Sbjct: 38  LIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVP 92



 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
 Frame = +1

Query: 73  KKRQISHKR--VVTREYTVNLHKRLHGV----------------GFKKACPKSNQRNPKV 198
           KKR    ++  VVTREYT+NLHKRLHG                  FKK  P + +   K 
Sbjct: 4   KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63

Query: 199 R*KTDGESGHSIELA*TNSL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTY--V 369
             K  G +   I++    ++   G       V V    R+RND+ D+   L++LVT   +
Sbjct: 64  AQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRV-RISRKRNDEEDAKEELYSLVTVAEI 122

Query: 370 PVASIKGLQTXML 408
           P   +KGL T ++
Sbjct: 123 PAEGLKGLGTKVV 135


>01_04_0060 -
           15552024-15552070,15552249-15552435,15552643-15552930,
           15553027-15553221,15553330-15553431,15553588-15553842,
           15553936-15553995
          Length = 377

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 125 IYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDI 229
           +Y  D +++    R+P   KE+RK  EK M  PDI
Sbjct: 41  VYCQDSLLVFSTGRSPTLYKELRK--EKPMLTPDI 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,574,125
Number of Sequences: 37544
Number of extensions: 148890
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)