Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30888.Seq
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  32   0.19 
SB_59536| Best HMM Match : Tetraspannin (HMM E-Value=1.3)              27   7.1  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +1

Query: 310 RRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
           R+RN+D DS   L+TLVT V V++ KGLQT
Sbjct: 813 RKRNEDEDSPHKLYTLVTSVAVSTFKGLQT 842



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 73  KKRQISHKRVVTREYTVNLHKRLHGV 150
           KK + +   VVTREYT+NLHKR+HG+
Sbjct: 776 KKGRSAINEVVTREYTINLHKRIHGM 801


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 310 RRRNDDXDSAXXLFTLVTYVPVASIKGL 393
           R+RN+D DS   L+TLVT V V++ K L
Sbjct: 13  RKRNEDEDSPHKLYTLVTSVAVSTFKVL 40


>SB_59536| Best HMM Match : Tetraspannin (HMM E-Value=1.3)
          Length = 369

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 137 RLCKLTVYSRVTTRLWLICLFFH 69
           +LC++  YS + T LW+   F H
Sbjct: 111 KLCEVIFYSMIATCLWVFWAFLH 133


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 271 DSLRPKNLFKRVLSNVRIPHLFFSELSD 188
           DS   + L +R L NVR+ HL F  L D
Sbjct: 837 DSALTRFLVRRALGNVRLMHLLFWFLKD 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,922
Number of Sequences: 59808
Number of extensions: 183399
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)