Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30888.Seq
(447 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31 pro... 80 3e-15
X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for ... 80 3e-15
BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31 p... 80 3e-15
BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31 p... 80 3e-15
AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein. 80 3e-15
AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31 p... 80 3e-15
BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein. 75 1e-13
AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31 p... 44 2e-04
>X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31
protein.
Length = 121
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 7 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 66
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
++ G + V R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 67 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 115
Score = 71.3 bits (167), Expect = 1e-12
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Frame = +2
Query: 59 KPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR* 235
K GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 1 KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRI 60
Query: 236 NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 61 DTRLNKAVWAKGIRNVP 77
>X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for
ribosomal protein L31. ).
Length = 125
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
++ G + V R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 71 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 119
Score = 72.9 bits (171), Expect = 4e-13
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 AKPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR 232
AK GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 233 *NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 64 IDTRLNKAVWAKGIRNVP 81
>BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
++ G + V R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 71 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 119
Score = 72.9 bits (171), Expect = 4e-13
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 AKPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR 232
AK GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 233 *NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 64 IDTRLNKAVWAKGIRNVP 81
>BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
++ G + V R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 71 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 119
Score = 72.9 bits (171), Expect = 4e-13
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 AKPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR 232
AK GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 233 *NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 64 IDTRLNKAVWAKGIRNVP 81
>AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein.
Length = 125
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
++ G + V R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 71 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 119
Score = 72.9 bits (171), Expect = 4e-13
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 AKPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR 232
AK GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 233 *NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 64 IDTRLNKAVWAKGIRNVP 81
>AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
++ G + V R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 71 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 119
Score = 72.9 bits (171), Expect = 4e-13
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 AKPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR 232
AK GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 233 *NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 64 IDTRLNKAVWAKGIRNVP 81
>BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein.
Length = 121
Score = 74.5 bits (175), Expect = 1e-13
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Frame = +1
Query: 73 KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
KK + + VVTREYT+N+HKR+HGVGFKK P++ + K K G I+
Sbjct: 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK 70
Query: 253 SL-V*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIK 387
++ G + V R+RN+D DS L+TLVTYVPV + K
Sbjct: 71 AVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115
Score = 72.9 bits (171), Expect = 4e-13
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 AKPKGERK-GKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR 232
AK GE+K G+SAINE++ + + KKRAPRA+KEIRKFA K+MG PD+R
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 233 *NS-LKQILWSKGVXNVP 283
++ L + +W+KG+ NVP
Sbjct: 64 IDTRLNKAVWAKGIRNVP 81
>AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31
protein.
Length = 47
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 310 RRRNDDXDSAXXLFTLVTYVPVASIKGLQT 399
R+RN+D DS L+TLVTYVPV + K LQT
Sbjct: 12 RKRNEDEDSPNKLYTLVTYVPVTTFKNLQT 41
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,561,351
Number of Sequences: 237096
Number of extensions: 799903
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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