Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30888.Seq
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...    64   4e-11
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    39   0.001

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +2

Query: 62  PKGERKGKSAINELLPVNIQLIYTNDFMVLXLKKRAPRAIKEIRKFAEKQMGNPDIR*NS 241
           PK E+K +S INE++     +        +  KKRAPRAI EI+KFA+ QM   D+R ++
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 242 -LKQILWSKGVXNVP 283
            L + +WSKG+ NVP
Sbjct: 63  KLNKFIWSKGIKNVP 77



 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
 Frame = +1

Query: 73  KKRQISHKRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TN 252
           KK + +   VVTREYT+++H R+ G+G KK  P++     K   K   ++         N
Sbjct: 7   KKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFA-KIQMKTNDVRVDTKLN 65

Query: 253 SLV--*GSXKCSLSVSV*GFXRRRNDDXDSAXXLFTLVTYVPVASIKGL 393
             +   G       V V    RRRN+D DSA  L+TL TYVP  +  GL
Sbjct: 66  KFIWSKGIKNVPYRVRV-RLSRRRNEDEDSAQKLYTLCTYVPCTNFHGL 113



 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 237 TRLNKFFGLRESEMFPXRVRVRLSXK 314
           T+LNKF   +  +  P RVRVRLS +
Sbjct: 62  TKLNKFIWSKGIKNVPYRVRVRLSRR 87


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +1

Query: 310 RRRNDDXDSAXXLFTLVTYVPVASIKGL 393
           RRRN+D DSA  L+TL TYVP  +  GL
Sbjct: 34  RRRNEDEDSAQKLYTLCTYVPCTNFHGL 61



 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 237 TRLNKFFGLRESEMFPXRVRVRLSXK 314
           T+LNKF   +  +  P RVRVRLS +
Sbjct: 10  TKLNKFIWSKGIKNVPYRVRVRLSRR 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,808
Number of Sequences: 27780
Number of extensions: 137960
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)