Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30888.Seq
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...    56   8e-09
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            56   1e-08
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            55   3e-08
At5g01400.1 68418.m00053 expressed protein contains low similari...    27   7.6  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +1

Query: 94  KRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TNSLV*GSX 273
           + VVTREYT+NLH+RLH   FKK  PK+ +   K   K  G     +++     +     
Sbjct: 9   EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGI 68

Query: 274 KCSLSVSV*GFXRRRNDDXDSAXXLFTLVTY--VPVASIKGLQTXML 408
           +           R+RNDD D+    F+LVT   +P   + GL T ++
Sbjct: 69  RGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKII 115



 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +2

Query: 158 KKRAPRAIKEIRKFAEKQMGNPDIR*N-SLKQILWSKGVXNVP 283
           KK+AP+AIKEIRKFAEK+MG  D+R +  L + +WSKG+   P
Sbjct: 30  KKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPP 72


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +1

Query: 94  KRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TNSLV*GSX 273
           + V+TREYT+NLH+RLH   FKK  PK+ +   K   K  G     +++     +     
Sbjct: 9   EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGI 68

Query: 274 KCSLSVSV*GFXRRRNDDXDSAXXLFTLVTY--VPVASIKGLQTXML 408
           +           R+RNDD D+    F+LVT   +P   + GL T ++
Sbjct: 69  RGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVI 115



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = +2

Query: 158 KKRAPRAIKEIRKFAEKQMGNPDIR*N-SLKQILWSKGVXNVP 283
           KK+AP+AIKEIRKFAEK MG  D+R +  L + +WSKG+   P
Sbjct: 30  KKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPP 72


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = +1

Query: 94  KRVVTREYTVNLHKRLHGVGFKKACPKSNQRNPKVR*KTDGESGHSIELA*TNSLV*GSX 273
           + VVTREYT+NLH+RLH   FKK  P + +   K   K  G     +++     +     
Sbjct: 9   EEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGI 68

Query: 274 KCSLSVSV*GFXRRRNDDXDSAXXLFTLVTY--VPVASIKGLQTXML 408
           +           R+RNDD D+    F+LVT   +P   + GL T ++
Sbjct: 69  RGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVI 115


>At5g01400.1 68418.m00053 expressed protein contains low similarity
           to symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 NLFKRVLSNVRIPHLFFSELSDFFDCSW 170
           +LF+  L  V +  L  SEL+D  + SW
Sbjct: 109 DLFRSTLERVAVQGLHSSELNDLLESSW 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,896,111
Number of Sequences: 28952
Number of extensions: 125972
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)