Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30883.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    29   0.34 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   2.4  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   3.2  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   5.6  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 450 LKTSSSSACISPLLDVNSPMSAT*NDPLPSHP 545
           +++SS+S   SPL+  +SP S+  ++P P+HP
Sbjct: 277 IRSSSTSPPRSPLIISDSPSSSIIHNPHPTHP 308


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 265 DYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDE 152
           D  +   SRYN C   +   +P     +G  F  F DE
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 287 YYILTEERLFSKIDVQIQPV*SSTTMPQSNNFVHSGYI 174
           YY ++  + FS+I VQ+QP  +    P +  F  + ++
Sbjct: 102 YYPISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFL 139


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 444 QLLKTSSSSAC-ISPLLDVNSPMSAT*NDPL 533
           QLLK+   S   + P   VN P++AT +DP+
Sbjct: 285 QLLKSYHLSILEVDPYFQVNDPITATNDDPV 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,704
Number of Sequences: 5004
Number of extensions: 43689
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)