Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30883.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0353 + 22287313-22287448,22287573-22287702,22288605-22289367     28   5.6  
04_04_1442 + 33628102-33628246,33628352-33628494,33628618-336288...    27   9.9  

>02_04_0353 + 22287313-22287448,22287573-22287702,22288605-22289367
          Length = 342

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -2

Query: 487 SGEIQADDDDVFNSWSXM*LAMFTYIVN**NHNLITDIITYSNLFL 350
           SGE+Q +DDD    W+ + L M    ++  + +L ++++T + +FL
Sbjct: 283 SGELQGEDDDDKGYWNSI-LNMVNSSMSSSSSSLTSEVVTDTEMFL 327


>04_04_1442 +
           33628102-33628246,33628352-33628494,33628618-33628831,
           33628925-33629159,33629285-33629372,33629526-33629885
          Length = 394

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 24  PSFERMGHHSVDVDGXSFIIFELSLCWRIYHLMRKXRLILSK 149
           P +   G  +V  D  SF +  L + WR+Y   +   L+ +K
Sbjct: 251 PEYAIRGELTVKADTYSFGVLVLEIAWRLYEQSKILELVDAK 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,602
Number of Sequences: 37544
Number of extensions: 257712
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)