Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30883.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    41   5e-04
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    40   9e-04
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   3.9  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    28   3.9  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 31/55 (56%)
 Frame = +2

Query: 71  VFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLV 235
           VF+YI+AV L  DL F+       +   VI+ +  Y   A  CWIAA LY +TL+
Sbjct: 32  VFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK--YNEKATQCWIAAGLYAVTLI 81



 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 1  GPKLSLCGLVLSVWGIIQLTLMG 69
          GPK+S   +V+SVWG+I L L+G
Sbjct: 9  GPKMSAFCMVMSVWGVIFLGLLG 31


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 77  YYIRAVALLEDLPFDEKNXPHSI-EDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGHQF 253
           +Y ++V L EDLP + K    S+  D      K Y  NA NCWIA  +Y+   V+   + 
Sbjct: 28  FYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLYQQNAYNCWIACGVYIGIAVLLSLRA 87

Query: 254 C*II 265
           C ++
Sbjct: 88  CCLV 91


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 134 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 238
           PHS E    E+E+ +    ++C+  AL  L+TLV+
Sbjct: 81  PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 188 AQNCWIAALLYLITLVVSGHQFC*IIVPQLVCNIEGV 298
           A N W+   LY  TLVV G + C +I+  +   I  +
Sbjct: 360 AANSWLWVFLYYSTLVVVGWKSCALIMKTITVTIADI 396


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 271 RNDYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDEVFDRMRRIFL 122
           +ND  +K M+    C  VQ C    +  I+ I +F  +  V D   R F+
Sbjct: 200 KNDAKSKQMNSKEICFLVQTCLQGVLFSIELICYFIISPRVEDTWVRFFM 249


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 229 CNQVQQCRNPTILCIQGISF-FHFNDEVFDRMRRIFLIKW 113
           C + +QCR P  LC QG +  F+ N +  DR R   L K+
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,314
Number of Sequences: 27780
Number of extensions: 239460
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)