Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30883.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    30   0.89 
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    29   1.5  
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    28   4.7  
At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    27   8.3  

>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 330 KIVFSFARNRLLYVIMSVIKLWFYQLTI*VNIASYIXLQLLKTSSSSACISPLLDVNSPM 509
           +++F+F  N  +Y I S  +    QL   +N+ASY  L +  ++S  + ++P   V+S +
Sbjct: 209 QLLFNFTLNFSIYQIQSNFEELASQLKKGINLASYENLYITLSNSRGSTVAPPTIVHSSV 268

Query: 510 SAT 518
             T
Sbjct: 269 LLT 271


>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 327 YKIVFSFARNRLLYVIMSVIKLWFYQLTI*VNIASYIXLQLLKTSSSSACISPLLDVNS 503
           +KIVF+F  N  ++ I         QL   +N+A Y  L +  ++S  + +SP   V+S
Sbjct: 203 FKIVFNFTLNYSIHQIQINFNTLASQLKNGLNLAPYENLYVSLSNSEGSTVSPPTTVHS 261


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase, Zea mays,
           PIR2:JQ1329; contains non-consensus (GC) donor splice
           site at intron 4
          Length = 1050

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 93  SLCWRIYHLMRKXRLIL 143
           ++CWRI+HL RK + I+
Sbjct: 102 NICWRIWHLARKKKQIV 118


>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 356 QVAICNYVCN*VVVLSIDNIGKHS*LHXTP---TIKNIVIVSLYLSTAG 493
           +V I N VC  V V+ +D+  KH  L       T  N+ I   Y+S+ G
Sbjct: 26  RVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDG 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,656,726
Number of Sequences: 28952
Number of extensions: 215338
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)