Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30880.Seq
         (417 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.39 
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   4.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   4.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.4  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.4  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 168 AKSKNHTNHNQNRKAHRNGIKKPRKTRHEPP 260
           ++SK      +  +  RN   +PR +R EPP
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 281 LRNPRFCKKGNLKPAKQLAKAAERKLPE 364
           L+N R CKK   K   Q+    +  +P+
Sbjct: 31  LKNFRLCKKHKTKKPVQILALLQEIIPK 58


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 281 LRNPRFCKKGNLKPAKQLAKAAERKLPE 364
           L+N R CKK   K   Q+    +  +P+
Sbjct: 31  LKNFRLCKKHKTKKPVQILALLQEIIPK 58


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 303 LQNLGFLKNFGSMPRVVRAW 244
           L N+ F+K     P++++AW
Sbjct: 406 LVNIAFIKLATEWPQLMKAW 425


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 416 VLCVYWLTTNVHFLAL 369
           +LC  W+TT + F  L
Sbjct: 284 ILCALWITTLLLFTIL 299


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 242 LPWLFDTISVSFAVLVMI 189
           L W + TIS++F + V +
Sbjct: 3   LKWYYITISMAFIIFVSL 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,773
Number of Sequences: 336
Number of extensions: 1494
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)