Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30880.Seq
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    61   6e-11
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   3.6  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   4.7  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   6.2  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   6.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           24   8.2  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 61.3 bits (142), Expect = 6e-11
 Identities = 30/50 (60%), Positives = 35/50 (70%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIQGFARRVT 314
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++        F   Q FA R T
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGT 50


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 VGIYSNDFIFLYRIENSSKWQSQRIIQIITKTAK 210
           +G+Y     ++Y   NS+ W++ R+     KTAK
Sbjct: 249 IGLYMAGAAYMYNYTNSTVWKT-RVEGFANKTAK 281


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRK 242
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 196 TKTAKLTEMVSKSQGRPGTN 255
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 SKNHTNHNQNRK-AHRNGIKKPRKTRHEPP 260
           S N+ NHNQ++   +R+  +  ++ ++ PP
Sbjct: 182 SSNNKNHNQSKNPQNRSNSRSKQRNKNAPP 211


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 338 SRVAWLASGYPSCKTLDSLKILDPCQGWFVPGLPWLFDTISVSFAVLVMICMIL 177
           S V  +AS   S + + +L+ +DP  GW      W   +I VS   +  I  +L
Sbjct: 585 SNVGGIASPISSPQNIVALQNMDPAAGWG----EWFAVSIPVSLLCIFSIWFLL 634


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 266 MDPKFLRNPRFCKKGNL 316
           ++PK L +P FC+K +L
Sbjct: 462 LEPKELEDPNFCRKTDL 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,647
Number of Sequences: 5004
Number of extensions: 24467
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)