Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30880.Seq
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 52 2e-07
05_03_0661 - 16726958-16726966,16727133-16727234 51 3e-07
03_06_0212 + 32400982-32402055 31 0.49
09_04_0603 - 18895998-18896392,18896491-18896617 29 2.0
03_04_0242 - 19238016-19238679,19239487-19239929 28 2.6
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 3.5
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413... 28 3.5
12_02_0396 + 18577574-18578056,18578094-18578723 27 6.0
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 27 6.0
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 27 6.0
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 27 6.0
11_04_0061 + 13013963-13014070,13015228-13015422,13017927-130180... 27 8.0
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 27 8.0
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 27 8.0
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIQGFARR 308
MAKSKNHT HNQ+ KAH+NGIKKP++ R F Q ++R+
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRK 48
Score = 35.1 bits (77), Expect = 0.023
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 236 KEDQARTTLGMDPKFLRNPRFCKKGNLK 319
K + +T GMDPKFLRN R+ +K N K
Sbjct: 25 KRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTR 248
MAKSKNHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28
>03_06_0212 + 32400982-32402055
Length = 357
Score = 30.7 bits (66), Expect = 0.49
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 398 LTTNVHFLALASRVAFSQPPSRVAWLASGYPSCKTLDSLKILDPCQGWFVP 246
+ T + F L R+ F QP + WL + + +D+L LDP +P
Sbjct: 74 VATAIQFYDLQDRLGFDQPSKAIEWLINA--ASPAIDTLPSLDPAAFAAIP 122
>09_04_0603 - 18895998-18896392,18896491-18896617
Length = 173
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 254 TTLGMDPKFLRNPRFCKKGNLKPAKQL--AKAAERKLPEKPRPRNEH 388
TT+G P+ P CKK PA L A A + P P EH
Sbjct: 47 TTIGFCPRLRAAPPSCKKAEADPAPSLQDAVVAVDAVLRAPPPPQEH 93
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PAK+L + A+RK P P+PR
Sbjct: 326 PAKKLEQLAQRKPPSAPKPR 345
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PAK+L ++A++K P P+PR
Sbjct: 651 PAKKLEQSAQKKPPSAPKPR 670
>04_01_0303 +
4132988-4133184,4133701-4134202,4134261-4134638,
4134657-4135301
Length = 573
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PAKQL ++A++KLP P+ +
Sbjct: 531 PAKQLEQSAQKKLPSAPKTK 550
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PAK+L + A+RK P P+P+
Sbjct: 328 PAKKLEQPAQRKPPSAPKPK 347
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PA++L + A+RK P P+PR
Sbjct: 375 PARKLEQPAQRKPPSAPKPR 394
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRP 376
PAK+L ++A+RK P P+P
Sbjct: 397 PAKKLEQSAQRKPPSAPKP 415
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PAK+L + A++K P P+PR
Sbjct: 343 PAKKLEQPAQKKPPSAPKPR 362
>11_04_0061 +
13013963-13014070,13015228-13015422,13017927-13018046,
13018377-13019015
Length = 353
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPRNE 385
PAK+L + A++K P P+P+ +
Sbjct: 16 PAKKLEQPAQKKSPSAPKPKKK 37
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 320 PAKQLAKAAERKLPEKPRPR 379
PAK+L ++A++K P P+P+
Sbjct: 544 PAKKLEQSAQKKPPSAPKPK 563
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 115 IYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQG 240
+ D + RIEN +RI++ TK +KL ++ K++G
Sbjct: 214 VEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEG 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,826,566
Number of Sequences: 37544
Number of extensions: 148032
Number of successful extensions: 498
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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