Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30880.Seq
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    57   6e-09
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    47   5e-06
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   3e-05
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    27   5.5  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    27   5.5  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    27   5.5  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   5.5  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   5.5  
Z74043-3|CAA98546.1|  125|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte ...    26   9.5  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRK 242
           MAKSKNHTNHNQN+KAHRNGI KP+K
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKK 26



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 263 GMDPKFLRNPRFCKKGNLKPAKQLAKAAERK 355
           G+D KF++N RF +K N    +Q+ K+ E K
Sbjct: 34  GVDAKFIKNLRFSRKNN---KRQINKSVESK 61


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPRK 242
           K +NHTNHN+N KAHRNGI KP+K
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKK 37


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPR 239
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 156 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIQGFARRVT*SQPSNS 335
           +++MA+ K   N     ++ R   + PR+    PP    ++    +  +RR      S S
Sbjct: 68  VVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS--RDRKRSRRSRSRSSSRS 125

Query: 336 RRRLRESYPRSQGQ 377
           R  +RES  RS+ +
Sbjct: 126 RSPVRESRRRSESR 139


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 156 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIQGFARRVT*SQPSNS 335
           +++MA+ K   N     ++ R   + PR+    PP    ++    +  +RR      S S
Sbjct: 68  VVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS--RDRKRSRRSRSRSSSRS 125

Query: 336 RRRLRESYPRSQGQ 377
           R  +RES  RS+ +
Sbjct: 126 RSPVRESRRRSESR 139


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 156 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIQGFARRVT*SQPSNS 335
           +++MA+ K   N     ++ R   + PR+    PP    ++    +  +RR      S S
Sbjct: 68  VVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS--RDRKRSRRSRSRSSSRS 125

Query: 336 RRRLRESYPRSQGQ 377
           R  +RES  RS+ +
Sbjct: 126 RSPVRESRRRSESR 139


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 225  YHFCELCGFGYDLYDSL 175
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 225  YHFCELCGFGYDLYDSL 175
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>Z74043-3|CAA98546.1|  125|Caenorhabditis elegans Hypothetical
           protein T19B10.4b protein.
          Length = 125

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
           + K +  +N+N K    G +   +  H+PP+
Sbjct: 35  QKKGNNQNNKNNKNQNGGNRNQNRQHHQPPM 65


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
           + K +  +N+N K    G +   +  H+PP+
Sbjct: 35  QKKGNNQNNKNNKNQNGGNRNQNRQHHQPPM 65


>AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform b protein.
          Length = 644

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 266 CQGWFVPGLPWLFDTISV---SFAVLVMICMIL*LC 168
           C G  + G+ W FDT+ +      VL++  + L LC
Sbjct: 310 CNGRIIKGVGWSFDTLLIGGTDIFVLILCILSLILC 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,801,826
Number of Sequences: 27780
Number of extensions: 136870
Number of successful extensions: 463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)