Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30880.Seq
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.021
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.79 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.021
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 407 VYWLTTNVHFLALASRVAFSQPPSRVAWLASGYPSCKTLD-SLKILDP 267
           V+    N  FL LAS +      +   WL+ G    ++ D +L++LDP
Sbjct: 6   VFTTLINAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLDP 53


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 171 KSKNHTNHNQNRKAHRNGIKKPRKTRH 251
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 144 VKENKVVTVNTYXTYSSLY 88
           VKE K + VN   TY S++
Sbjct: 908 VKEGKFMNVNMLDTYESVH 926


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
 Frame = -2

Query: 359 VAFSQPPSRVAWLASG---YPSCKTLDSLKI--LDP 267
           VA   PP  ++WL  G   +P    L S  I  LDP
Sbjct: 634 VAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDP 669



 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 213  HRNGIKKPRKTRHEPPLA 266
            H NGI +  K  +EP LA
Sbjct: 1139 HSNGIIQGYKLHYEPILA 1156


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 156 LIKMAKSKNHTNHNQNRKAHRN 221
           LI   +  N  N N N+  H N
Sbjct: 577 LIMNTRCANSDNQNNNQNKHNN 598


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 SQPSNSRRRLRESYPRSQGQEMNISC 395
           S+P ++RR++     +++G +  + C
Sbjct: 269 SKPQHARRKVLAGIVQTKGSDAELIC 294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 213  HRNGIKKPRKTRHEPPLA 266
            H NGI +  K  +EP LA
Sbjct: 1135 HSNGIIQGYKLHYEPILA 1152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,605
Number of Sequences: 438
Number of extensions: 1879
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)