Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    81   9e-17
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    81   9e-17

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 81.0 bits (191), Expect = 9e-17
 Identities = 38/76 (50%), Positives = 52/76 (68%)
 Frame = +2

Query: 26  IQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 205
           +Q+VQ FG+K  ATAV + K G G+ +V G PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 206 XIXXXVKGGGXVAQVY 253
            I   V GGG V+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76



 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQAISKA++A+ QK+V   SK E+K  L+ YDR+LL
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114



 Score = 33.5 bits (73), Expect = 0.018
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P   E KKFGG   RAR QKSYR
Sbjct: 118 PRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 81.0 bits (191), Expect = 9e-17
 Identities = 38/76 (50%), Positives = 52/76 (68%)
 Frame = +2

Query: 26  IQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 205
           +Q+VQ FG+K  ATAV + K G G+ +V G PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 206 XIXXXVKGGGXVAQVY 253
            I   V GGG V+Q+Y
Sbjct: 61  DIRVRVSGGGHVSQIY 76



 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQAISKA++A+ QK+V   SK E+K  L+ YDR+LL
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114



 Score = 33.5 bits (73), Expect = 0.018
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P   E KKFGG   RAR QKSYR
Sbjct: 118 PRRMEPKKFGGHGARARQQKSYR 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,861
Number of Sequences: 5004
Number of extensions: 22322
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)