Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           81   4e-16
11_01_0155 - 1287003-1287452                                           81   4e-16
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    28   4.8  
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828...    28   4.8  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 37/79 (46%), Positives = 51/79 (64%)
 Frame = +2

Query: 17  REPIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKF 196
           R P   VQ FGRKKTA AV Y K G G+ +V G P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 197 SMVXIXXXVKGGGXVAQVY 253
             + +   V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +1

Query: 223 QGWWSXSTSLRIRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           +G    S    IRQAI+KAL+A+ QKYV  ASKKE+KD   +YDR+LL
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 37/79 (46%), Positives = 51/79 (64%)
 Frame = +2

Query: 17  REPIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKF 196
           R P   VQ FGRKKTA AV Y K G G+ +V G P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 197 SMVXIXXXVKGGGXVAQVY 253
             + +   V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +1

Query: 223 QGWWSXSTSLRIRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           +G    S    IRQAI+KAL+A+ QKYV  ASKKE+KD   +YDR+LL
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 9   RQDVSPSRPSKYSDVRKPPPQXRIXS 86
           R+  S S P K SD R PPP+ R  S
Sbjct: 33  RRSTSRSPPPKKSDSRSPPPRRRSTS 58


>07_03_1483 +
           26881032-26882035,26882130-26882204,26882324-26882861,
           26883999-26884895,26885178-26885327,26885459-26885791,
           26886501-26886695,26887805-26887918
          Length = 1101

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 144 CCST-NFRNLSFCSARKNSLWXXSXXXSRVVV 236
           CC+   + +LS C   KN++W  S   S ++V
Sbjct: 726 CCNQLRYLSLSNCDVGKNAIWKISAPNSNIIV 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,364
Number of Sequences: 37544
Number of extensions: 174171
Number of successful extensions: 325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)