Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQAISK+L+A+ QKYV   SKKEI+D LVQYDRSLL
Sbjct: 45  IRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLL 81



 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +2

Query: 155 KLQEPILLLGKEKFSMVXIXXXVKGGGXVAQVY 253
           K++EPILLLGKE+F  V I   VKGGG  +++Y
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIY 43



 Score = 35.5 bits (78), Expect = 0.025
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P   E KKFGG   R+RYQKSYR
Sbjct: 85  PRRTEAKKFGGPGARSRYQKSYR 107


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 199 REFFLAEQKDRFLKFVLQQXGXNQ--VQWAP 113
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,371
Number of Sequences: 59808
Number of extensions: 184540
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)