Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.                 107   3e-23
BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.       107   3e-23
BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16 p...   107   3e-23
BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16 p...   107   3e-23
AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16 p...   107   3e-23
AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens ...    60   3e-09

>M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.
          Length = 146

 Score =  107 bits (256), Expect = 3e-23
 Identities = 49/77 (63%), Positives = 61/77 (79%)
 Frame = +2

Query: 23  PIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 202
           P+Q+VQVFGRKKTATAV + K G G+ +V GRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 203 VXIXXXVKGGGXVAQVY 253
           V I   VKGGG VAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQ+ISKAL+A+ QKYV  ASKKEIKD L+QYDR+LL
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146


>BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.
          Length = 152

 Score =  107 bits (256), Expect = 3e-23
 Identities = 49/77 (63%), Positives = 61/77 (79%)
 Frame = +2

Query: 23  PIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 202
           P+Q+VQVFGRKKTATAV + K G G+ +V GRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 203 VXIXXXVKGGGXVAQVY 253
           V I   VKGGG VAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82


>BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  107 bits (256), Expect = 3e-23
 Identities = 49/77 (63%), Positives = 61/77 (79%)
 Frame = +2

Query: 23  PIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 202
           P+Q+VQVFGRKKTATAV + K G G+ +V GRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 203 VXIXXXVKGGGXVAQVY 253
           V I   VKGGG VAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQ+ISKAL+A+ QKYV  ASKKEIKD L+QYDR+LL
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146


>BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  107 bits (256), Expect = 3e-23
 Identities = 49/77 (63%), Positives = 61/77 (79%)
 Frame = +2

Query: 23  PIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 202
           P+Q+VQVFGRKKTATAV + K G G+ +V GRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 203 VXIXXXVKGGGXVAQVY 253
           V I   VKGGG VAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQ+ISKAL+A+ QKYV  ASKKEIKD L+QYDR+LL
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146


>AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  107 bits (256), Expect = 3e-23
 Identities = 49/77 (63%), Positives = 61/77 (79%)
 Frame = +2

Query: 23  PIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 202
           P+Q+VQVFGRKKTATAV + K G G+ +V GRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 203 VXIXXXVKGGGXVAQVY 253
           V I   VKGGG VAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQ+ISKAL+A+ QKYV  ASKKEIKD L+QYDR+LL
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P  CE KKFGG   RARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146


>AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40618 fis, clone THYMU2013089, moderately
           similar to 40S RIBOSOMAL PROTEIN S16. ).
          Length = 178

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 32/76 (42%), Positives = 45/76 (59%)
 Frame = +2

Query: 26  IQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 205
           +Q+VQ+F  K+ A AV   + G G  R+   PL+++    LQYKL E  LLL KE+ + +
Sbjct: 18  LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77

Query: 206 XIXXXVKGGGXVAQVY 253
            I   VKG G V Q+Y
Sbjct: 78  DIHVRVKGSGHVVQIY 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,814,934
Number of Sequences: 237096
Number of extensions: 908219
Number of successful extensions: 1506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)