Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   120   1e-27
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   120   1e-27

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  120 bits (289), Expect = 1e-27
 Identities = 56/84 (66%), Positives = 67/84 (79%)
 Frame = +2

Query: 2   VQEARREPIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLL 181
           +Q+ RREP+QAVQVFGRKKTATAV Y K G G+ +V GRPL+ + P +LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 182 GKEKFSMVXIXXXVKGGGXVAQVY 253
           GKEKF+ V I   V GGG VAQ+Y
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIY 84



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQAISKAL+AF QKYV  ASKKEIKD LVQYDR+LL
Sbjct: 86  IRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLL 122



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/25 (72%), Positives = 18/25 (72%)
 Frame = +3

Query: 369 G*PASCEXKKFGGXXGRARYQKSYR 443
           G P  CE KKFGG   RARYQKSYR
Sbjct: 124 GDPRRCEPKKFGGPGARARYQKSYR 148


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  120 bits (289), Expect = 1e-27
 Identities = 56/84 (66%), Positives = 67/84 (79%)
 Frame = +2

Query: 2   VQEARREPIQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLL 181
           +Q+ RREP+QAVQVFGRKKTATAV Y K G G+ +V GRPL+ + P +LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 182 GKEKFSMVXIXXXVKGGGXVAQVY 253
           GKEKF+ V I   V GGG VAQ+Y
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIY 84



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           IRQAISKAL+AF QKYV  ASKKEIKD LVQYDR+LL
Sbjct: 86  IRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLL 122



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/25 (72%), Positives = 18/25 (72%)
 Frame = +3

Query: 369 G*PASCEXKKFGGXXGRARYQKSYR 443
           G P  CE KKFGG   RARYQKSYR
Sbjct: 124 GDPRRCEPKKFGGPGARARYQKSYR 148


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,942
Number of Sequences: 53049
Number of extensions: 265338
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)