Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30876.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    97   8e-21

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 44/76 (57%), Positives = 57/76 (75%)
 Frame = +2

Query: 26  IQAVQVFGRKKTATAVXYXKXGXGMXRVXGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 205
           +Q+VQ FGRKKTATAV + K G G+ +V GRPL+ + P +L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 206 XIXXXVKGGGXVAQVY 253
            I   V GGG VAQ+Y
Sbjct: 65  DIRIRVSGGGHVAQIY 80



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +1

Query: 256 IRQAISKALIAFXQKYVXXASKKEIKDXLVQYDRSLL 366
           +RQA++KAL+A+  KYV   SK+E+K+    YD+SLL
Sbjct: 82  VRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLL 118



 Score = 35.9 bits (79), Expect = 0.016
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = +3

Query: 375 PASCEXKKFGGXXGRARYQKSYR 443
           P   E KKFGG   RARYQKSYR
Sbjct: 122 PRRRESKKFGGPGARARYQKSYR 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,935,029
Number of Sequences: 27780
Number of extensions: 130811
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)